Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0483 ATGATGCTGCCTTGTAGATTTGTTGTTGTTTTGTTTGTTTTGGTTTTTGTTATTATGATGGTTGAGGTGGATTTAGCAGAATGTGGTAATAGGGGTGTTAGGAATTACATTAGTTGGGAAGATATGATGGTTGATGAACAAAGGTTAGTTCTGAAGAAGAACATTAATCATAATGAGAGAGTTATTGTTGTTGATCAGAATGGATATGGACATTCCAAAACTGTTCAAGGAGCAGTTGATTTAGTTCCTGATTGGAATCAACACAGAGTCAAAATCTACATTTTTCCGGGAATTTACAAAGAAAGAGTGTTTGTGTCAATCACAAAACCTTATATATCATTTATAGGTAGAAGAAATGAAACAGCAAGTCCTGTAATTACATGGAACAGTAAATCATCAGATAAAGGTCCAAATGGTCAAACATTAGGAACCTATGGTTCAGCAACTGTAGCAGTTGATTCAAATTTTTTCTGTGCTACTGAGGTCACTTTTGAGAACACAGTTGTTGCATCAGCAGGTGGAGAAGGAATGCAAGCAGTGGCACTAAGGGTAAACAGTGATAAAGCAATGTTTTATAGAGTTAAGATTAAAGGAACACAAGACACACTCTTAGACAACACAGGAACTCACTACTTCTATAGATGTGTCATCCAAGGAAAAGTTGATTTCATCTTTGGCAGTGCAAAATCACTCTATGAGAAGTGTAGGCTTCAGTCAATTGCTGAGAACTATGGAGCAATTGCAGCACACCATAGAGATTCACCACTTCAAGATACAGGATTTTCATTTGTTGGATGCAGTATTAGAGGAACAGGAAATGTTTACCTTGGAAGAGCATGGGGTGACTACTCAAGAATAATTTACTCAAATTGTAATATGGATGATATTATTAAACCTGAAGGCTGGTCAGAATGGAATGATCCAAATAGAAGAAAGACAGCAGTGTTTGGTGAATATAACTGCCATGGAAAAGGAGCAGATAGAATACAAAGGGTTCCTTGGTCAAAATCATTAAGCTATGGAGAAGCAAAGCCTTACTTGGACATTAACTTCATAAATGGCAATCAGTGGCTCAGACTATAG 1083 0.3675 MMLPCRFVVVLFVLVFVIMMVEVDLAECGNRGVRNYISWEDMMVDEQRLVLKKNINHNERVIVVDQNGYGHSKTVQGAVDLVPDWNQHRVKIYIFPGIYKERVFVSITKPYISFIGRRNETASPVITWNSKSSDKGPNGQTLGTYGSATVAVDSNFFCATEVTFENTVVASAGGEGMQAVALRVNSDKAMFYRVKIKGTQDTLLDNTGTHYFYRCVIQGKVDFIFGSAKSLYEKCRLQSIAENYGAIAAHHRDSPLQDTGFSFVGCSIRGTGNVYLGRAWGDYSRIIYSNCNMDDIIKPEGWSEWNDPNRRKTAVFGEYNCHGKGADRIQRVPWSKSLSYGEAKPYLDINFINGNQWLRL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0483 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 360 - -
Tpr6g0483 360 Pfam Pectinesterase 62 355 IPR000070 GO:0030599|GO:0042545
Tpr6g0483 360 SUPERFAMILY Pectin lyase-like 60 358 IPR011050 -
Tpr6g0483 360 Gene3D - 55 360 IPR012334 -
Tpr6g0483 360 PANTHER PECTINESTERASE QRT1 14 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0483 Tpr-Chr6 3986550 3988501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0483 7 312 Carbohydrate Esterase AT5G55590 54.434 1.60e-125 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0483 K01051 - gmx:100813382 528.48