Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0481 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGTTTGAAGAAAGGAAGGTGGACTGCAGAAGAGGATGAAATTTTGACCCAATATGTTAAGACTAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTGCTTAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAACTATTTGAGAGATGATCTTAAAAGGGGAAATATTTCTGCTGAAGAGGAAAGCATCATTATCAAGCTGCATGCTTCTTTTGGCAACAGATGGTCTTTGATCGCAAGTCACTTACCAGGAAGAACAGACAACGAGATTAAAAACTACTGGAACTCTCACTTGAGTAGGAAAGTTTTCAGCTTCAAAGGAACAGCAACAAATTATAATAATTCCAATAATAATAAAGAGATGCCCTTGCAACAAGGGAATGTAGTAGACACACCTCACAAACGTAGAGGTGGTAGGACTAGCAGGTGGGCCATGAAGAAGAACAAACGCTATGCCCAAAATATTTTCCAAAGTCCAAAATTACAAAGAAGTGAACCTGCTGCAATTACACTTCCACCCACCCCTACATTTGAGAGTGAGAAATTGTCTACAAGGGTAATAAAGGAATTCAAGGTTATGGACCCTGAAAATGGGCCGTCTTCTAGTGGAGAAGTAGAAGACGGTCCAAGTGAATTGCAGTTACCGTGCATTGATGGTAAAAGTATTGAAATTGATGGTGACCGCAAGTTGGGACCATATCCAAAGGTCATTAATGCCGGCGAGGTGGATTTTAATGATAATGTTATGGACACTTGCGAGGTGGAAGAAGAAAGAAAAAGTAATGATGAAAATGTGGTTGTGATTAATGAAAGAGCGGGGGACAAAGGCACTAACACAAAAGGAACAAGAGACCTAGAGAGTAATAGTAATGTGGCGAATTATGGTTCGAATTCGAATGAAGAGTTGAATTCTTCTTCCATGGATATGGATTTGGATTTGGATGATAATTTGGATTGGGAGAGTGTGATGCCTTTGTTGAATCAGAAAGGAGAATCAGTGTCATGGGATCAAAGTGAAAACATGCTAACTTGGTTGTGGGAAGATGATGAATGGGAAAAAGATTTTCAGAAATTTCGAGAGATTGACCCTCAGAAGCTCAATGCTACGGTTTCTTGGTTTTTATCTTGA 1170 0.3966 MGRAPCCEKVGLKKGRWTAEEDEILTQYVKTNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRDDLKRGNISAEEESIIIKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVFSFKGTATNYNNSNNNKEMPLQQGNVVDTPHKRRGGRTSRWAMKKNKRYAQNIFQSPKLQRSEPAAITLPPTPTFESEKLSTRVIKEFKVMDPENGPSSSGEVEDGPSELQLPCIDGKSIEIDGDRKLGPYPKVINAGEVDFNDNVMDTCEVEEERKSNDENVVVINERAGDKGTNTKGTRDLESNSNVANYGSNSNEELNSSSMDMDLDLDDNLDWESVMPLLNQKGESVSWDQSENMLTWLWEDDEWEKDFQKFREIDPQKLNATVSWFLS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0481 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr6g0481 389 SMART sant 66 114 IPR001005 -
Tpr6g0481 389 SMART sant 13 63 IPR001005 -
Tpr6g0481 389 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr6g0481 389 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr6g0481 389 CDD SANT 16 61 IPR001005 -
Tpr6g0481 389 PANTHER MYB TRANSCRIPTION FACTOR 2 368 - -
Tpr6g0481 389 Gene3D - 11 67 - -
Tpr6g0481 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr6g0481 389 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr6g0481 389 CDD SANT 71 112 IPR001005 -
Tpr6g0481 389 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr6g0481 389 Gene3D - 69 141 - -
Tpr6g0481 389 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 368 - -
Tpr6g0481 389 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0481 Tpr-Chr6 3979786 3984749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0481 1 174 MYB Transcription Factor Family AT5G49330 63.934 2.58e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g0481 Myb_DNA-binding 3.5e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0481 6 3979786 3984749 Tpr1g2239 1 25147778 25152001 PCT