Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0480 ATGGCGCATCGAAGAGCCAAATTGCTGTTCCTTCTCTGCGCTATTTGCTATTCTCTCAATGCCATTGCCGCAAAGAGCTATTATGATATACTTCAAGTGTCGAAAGGTGCATCGGATGATCAGATTAAGAGAGCATATAGGAAGCTTGCATTGAAGTATCATCCTGATAAGAATCAGGGAAATGAAGAAGCTAATAAGAAATTTGCCGAGATTAACAATGCTTATGAAGTATTGTCGGATAGCGAGAAGAGAAATATTTACGATAAGTATGGTGAAGAGGGATTGAAGCAGCATGCTGCTGGTGGAGGAAGAGGCGGCGGAATGAACATGCAGGATATTTTTAACTCTTTCTTTGGTGGGGGATCAATGGAGGAAGAGGAGAAAATTGTAAAAGGTGATGACGTTATTGTTGATTTGGATGCAACCCTCGAAGATTTGTACATGGGTGGTTCCTTGAAGGTTTGGAGGGAGAAAAATGTTGTAAAGCCAGCACCTGGAAAAAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGACCAATGTGCTAATGTCAAATACGTAAGGGAGGGATATTTCGTCACTGTTGATATTGAGAAAGGCATGCAAGATGGCCAGGAGGTGCTATTTTATGAGGATGGCGAACCCATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCCGTACCGCACCTCATGAGCTTTTCAGAAGGGAAGGCAATGACTTACATACCACTGTCACTATTACCCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTAAACACCTTGATGAACATCTAGTCGACATAAGCGCCAAGGGAATCACAAATCCAAAGCAAGTAAGAAAGTTCAAAGGGGAGGGTATGCCGTTGCATGTCAGCACAAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTCTGTTCCCCACGTCGCTAACAGAGGAGCAGAAAACAAATATAAAATCAATTCTTGGTTAG 1032 0.4244 MAHRRAKLLFLLCAICYSLNAIAAKSYYDILQVSKGASDDQIKRAYRKLALKYHPDKNQGNEEANKKFAEINNAYEVLSDSEKRNIYDKYGEEGLKQHAAGGGRGGGMNMQDIFNSFFGGGSMEEEEKIVKGDDVIVDLDATLEDLYMGGSLKVWREKNVVKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCDQCANVKYVREGYFVTVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHELFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISAKGITNPKQVRKFKGEGMPLHVSTKKGDLYVTFEVLFPTSLTEEQKTNIKSILG* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0480 343 Coils Coil 61 81 - -
Tpr6g0480 343 CDD DnaJ_C 133 330 - -
Tpr6g0480 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 130 255 IPR008971 GO:0006457|GO:0051082
Tpr6g0480 343 Gene3D - 127 248 - -
Tpr6g0480 343 SUPERFAMILY Chaperone J-domain 22 122 IPR036869 -
Tpr6g0480 343 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Tpr6g0480 343 CDD DnaJ 27 80 IPR001623 -
Tpr6g0480 343 Pfam DnaJ C terminal domain 137 327 IPR002939 -
Tpr6g0480 343 PANTHER BNAA09G39960D PROTEIN 8 342 - -
Tpr6g0480 343 Gene3D - 249 327 - -
Tpr6g0480 343 PRINTS DnaJ domain signature 28 46 IPR001623 -
Tpr6g0480 343 PRINTS DnaJ domain signature 46 61 IPR001623 -
Tpr6g0480 343 PRINTS DnaJ domain signature 63 83 IPR001623 -
Tpr6g0480 343 PRINTS DnaJ domain signature 83 102 IPR001623 -
Tpr6g0480 343 SMART dnaj_3 25 83 IPR001623 -
Tpr6g0480 343 Pfam DnaJ domain 27 88 IPR001623 -
Tpr6g0480 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 336 IPR008971 GO:0006457|GO:0051082
Tpr6g0480 343 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Tpr6g0480 343 Gene3D DnaJ domain 23 126 IPR036869 -
Tpr6g0480 343 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 342 IPR044713 GO:0006457|GO:0030544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0480 Tpr-Chr6 3969521 3974985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0480 25 90 C2H2 Transcription Factor Family AT1G74250 42.254 6.25e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0480 K09517 - gmx:100807885 625.55