Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0471 ATGGAAGAAATTGTCTTGCTAGTTGATGATTTGAGGTTACTTTCAGGAATTTCTCGCTGTAGAATATGCCATGAAGAAGAATTTGAAAGCTCCAAAACCTTGGAAGCACCTTGTTCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGTAACGAAAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACAACTCCTCCTCCTAAGAAATCTGAGATAAATGATGAAGCAATGTCCAATAGGGATGAGGAAGAAGCTTCAGACAGAAGAAGAGAAAATGTGGTGGAAGGAATTGTAATAGAAAGTGATTGCAGTTCTACAGCTGACAGAACCGCGTCTCATTGTCGATCACTTGCATTAGCTTTTACACTTGTGTTACTAGTAAGACATTGTTTGGTAGTTCCTATAAGTGGAGCGGAAGATTACCCATTTACACTTTTTACCGTCATCGTACTAAAGGCTTGTGGAATTATTATACCCATGTACATAGTTACCAAGACAATCGGAATCATTCTGAATAGCATTCGGCGCTATAGAGGTTCTGACTATGACTCGTCATTTTCTGATGAAGATGGCAGAAATGAAGAAAATGTAATATATTCGTAG 642 0.3801 MEEIVLLVDDLRLLSGISRCRICHEEEFESSKTLEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTTPPPKKSEINDEAMSNRDEEEASDRRRENVVEGIVIESDCSSTADRTASHCRSLALAFTLVLLVRHCLVVPISGAEDYPFTLFTVIVLKACGIIIPMYIVTKTIGIILNSIRRYRGSDYDSSFSDEDGRNEENVIYS* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0471 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Tpr6g0471 213 SUPERFAMILY RING/U-box 19 72 - -
Tpr6g0471 213 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 203 IPR033275 -
Tpr6g0471 213 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Tpr6g0471 213 MobiDBLite consensus disorder prediction 194 213 - -
Tpr6g0471 213 CDD RING_CH-C4HC3_MARCH 20 67 - -
Tpr6g0471 213 MobiDBLite consensus disorder prediction 86 104 - -
Tpr6g0471 213 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Tpr6g0471 213 Pfam Protein of unknown function (DUF3675) 73 180 IPR022143 -
Tpr6g0471 213 MobiDBLite consensus disorder prediction 78 104 - -
Tpr6g0471 213 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 203 - -
Tpr6g0471 213 SMART ringv_2 19 68 IPR011016 GO:0008270
Tpr6g0471 213 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0471 Tpr-Chr6 3826705 3829687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0471 20 108 C3H Transcription Factor Family AT2G37950 32.222 3.61e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0471 - - mtr:MTR_7g109460 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0471 6 3826705 3829687 Tpr1g2249 1 25265167 25274239 PCT