Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0456 ATGGATAGTTCAAATAATATGGTGGATTGTGGTGGTAGTCTTCATGAATTTATAGAAATTGTTGACAAGTTTAAAGATGATGGTGTCGCATGTTGGGAGCCTGCAATGGATATGTGTTTTTCTTCTATGGATGACGCTAAATCTTTTTATGGAGAGTATGCTTTGAGAAAGGGCTTTAGGTGGAAGATTAGAACATCAAGAAAAGGACAGGATGGAGAAATAAACTACGTTATTCTAGCATGCACAAGAGAGGGGTCTACAGTCTCAAAGGTTCCATGTACATTGAAGACACTTCCGACAAGGGTGGACCATTGTCCCGCTAAGATTTGTATTAAGATGGAAATAGATGGATTGTGGTACATCAAAAAATTTGTTCCTGACCATTCTCACGAGACCATCCCTACAAAGGCAAGGTTGTTCAAGGCTAACAAGAAAATGAAGAGGACTATTGAAATAAATGATGATGCAGGTGGGCATGAAAATATATCGTTTTGTGAAAGAGACGTGAAGAATTATGTTAACCAGGAACGGCGTGCACTTGGAAAAGAAGGTGATAGCAAGGCTATGATGAGCTATTTTTGTGAAATGAGGGAAAGAAATTCAAATTTCTTCTACGACCTAGATTTAGATGACGATTTTCATGTAAAAAATGTGTTTTGGGCTGATGCAAGAAGTAGAGCTGCTTATGAGTATTTCGGAGATGTTGTAACTTTCGACACCACATACTTGACCAATAAATATGACATGCCGTTTGTTCTGTTTGTTGGTGTGAATCACCATGGTCAATCAACATTACTTGGATGCGGGTTGCTTTCGGGAGAAGACACTGAATCATTCATATGGTTGTTCAAGTCATGGCTTCGTTGTATGCTAGGAAAGGCCCCCATTGGGATTATAACCGACCAATGTAAGGCTATGCAAAATGCCATTGAGTTAGTGTTTCCTACAACATGCCACAGGTGGTGTTTAAGGAATATAATGAAAAAAATTCCTAAAAAGCTCAATGGATGCAATGAGTATAAAAAGATTAAGGATGCTATGGAAGAAGCAGTTTATGATACATACACAACAACTGCATTTGAAGAGAAATGGTGTTCCTTCATTGACAAATTTGAACTTCAGCAAAATAATTGGTTGAGTGAGTTGTATAATGAGCGTCATAGATGGGCACCAACCTTGTTACGGAAATATTTTTGGGCAGGTATGTCAACTATGCAACGAAGTGAGAGCGGACATGCTGCTTTCTTTGATGGATATATCAAGTCAACAACAAGTTTAAGTCAGTTTTTGAAGCAATATGATAATGCCCTTATAAGTCGAGCAGAAAAAGAATTTGAAGCGGATTTTAATTCCATGGACACTACAATTCCGTGTGGGTCAACCTCATCCATTGAAAAGCAATTTCAAGGTGAGTACACTCATTCCAAATTCAAGGAACTTCAAGTTGAATTTAGATCCAAAATGAATTGTGTTGCCTCGTTGAATATTGTGGAGGGTTGTCTTGCTACTTATCATGTGTTGGAGGATGTGGTGGTTGGAGACCAAACTAAAGAAATTGTCTTCAAAGTTGTGTTTAACAAGGAAAATCATGATTTCAGTTGTGAATGTTCGTTGTTTGAGTTTAGAGGTATATTGTGTCGCCATGTGTTATCTGTGTGTGCTCATGAAAGGATTATAAATGTGCCAAAGAAGTATGTTTTAACAAGATGGAAGAAAAATATTAAAAGGAAGCATTCATATGTTAAGAACAGTTATAGTGTGGCACAATTGAACCCACAAATGGAAAGATTTGACACATTGAACAAGCATTTCTATTATGTTGCTGAAGCTGCCGCTGAGTCCGAAGTTGTAACTAAGACACTCCATGAAACATTACATCAGTTCAGTTCTAATTTGCCACATTTGATGGAGGTGTAA 1917 0.3766 MDSSNNMVDCGGSLHEFIEIVDKFKDDGVACWEPAMDMCFSSMDDAKSFYGEYALRKGFRWKIRTSRKGQDGEINYVILACTREGSTVSKVPCTLKTLPTRVDHCPAKICIKMEIDGLWYIKKFVPDHSHETIPTKARLFKANKKMKRTIEINDDAGGHENISFCERDVKNYVNQERRALGKEGDSKAMMSYFCEMRERNSNFFYDLDLDDDFHVKNVFWADARSRAAYEYFGDVVTFDTTYLTNKYDMPFVLFVGVNHHGQSTLLGCGLLSGEDTESFIWLFKSWLRCMLGKAPIGIITDQCKAMQNAIELVFPTTCHRWCLRNIMKKIPKKLNGCNEYKKIKDAMEEAVYDTYTTTAFEEKWCSFIDKFELQQNNWLSELYNERHRWAPTLLRKYFWAGMSTMQRSESGHAAFFDGYIKSTTSLSQFLKQYDNALISRAEKEFEADFNSMDTTIPCGSTSSIEKQFQGEYTHSKFKELQVEFRSKMNCVASLNIVEGCLATYHVLEDVVVGDQTKEIVFKVVFNKENHDFSCECSLFEFRGILCRHVLSVCAHERIINVPKKYVLTRWKKNIKRKHSYVKNSYSVAQLNPQMERFDTLNKHFYYVAEAAAESEVVTKTLHETLHQFSSNLPHLMEV* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0456 638 PANTHER OS03G0843700 PROTEIN 26 629 - -
Tpr6g0456 638 Pfam FAR1 DNA-binding domain 48 132 IPR004330 -
Tpr6g0456 638 SMART 26again6 532 559 IPR006564 GO:0008270
Tpr6g0456 638 Pfam SWIM zinc finger 533 554 IPR007527 GO:0008270
Tpr6g0456 638 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 629 IPR031052 GO:0006355
Tpr6g0456 638 Pfam MULE transposase domain 235 329 IPR018289 -
Tpr6g0456 638 ProSiteProfiles Zinc finger SWIM-type profile. 521 557 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0456 Tpr-Chr6 3739008 3742174 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr6g0456 MULE 4e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0456 - - gmx:102667848 731.095