Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0453 ATGTCAAAAAGGAAGTTCGGATTCGAAGGTTTCGGCATAAACCGTCCATCAACCTACAGTTTCGAACGATCTGAAGCTCCTCAACGACTCTACGTTCCTCCTTCATCGCGTAAAAGTCACGACAACTACGAAGACAATGACCTCGATAACATCGAGTTCGATGATGATGCCAACGAAGAATCAAACAACAACGACGATAATAGTAACACCGTTAAAGGCGGTGATGGTGGTGAGGAAGAGGAAATCGATCCATTAGATGCTTTTATGGAAGGAATACACGAGGAGATGAAGGCGGCACCGCCTCCGAAGCCGAAGGAGAAGTTGGAAGATAGATACAAAGATGATGAAGAGGATCATATGGAGAGTTTTTTGAGGGCGAAAAAGGATTTAGGGTTGACGTTGGCGTCGGATGCCCTTCATGCTGGATATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTGGATGCTGGTTTGATTGATTATGATTCTGATGATAACCCTATTGTTCTTGATAAGAAGAAAATTGAACCTATAGCTCCTCTTGATCACACTGAAATTGATTATGAACCCTTTACTAAAGATTTTTATGAGGAGACACCTTCAATTTCAGGTATGAGTGAGCAAGATGTAACTGAATATAGGAAGAGTTTGGCTATTCGGGTATCGGGTTTTGATTGTCCTAAGCCAGTGAAAACATTTGAGGATTGTGGGTTTGCTTCACAAATTATGTCTGCTATAAAAAAACAAGGTTATGAGAAGCCCACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGTAGAGATATCATTGGCATAGCGAAAACTGGTTCTGGTAAAACTGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAGGGTCCTATTGGAGTGATATGTGCACCTACCAGAGAATTAGCACATCAGATATATCTCGAGGCGAAGAAATTTGCAAAAGCATATGGTATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTGAAAGCAGGCTGTGAGATAGTTGTTGCTACACCGGGGAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGCAAAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTCGATCTTGGATTTGAGCCACAAGTAAGGTCCATCGTTGGTCAGATTAGGCCGGACCGCCAAACTTTGCTCTTTTCTGCAACAATGCCTCGCAAAGTTGAGAAGTTAGCCAGGGAAATCCTTTCCGATCCTATTAGAGTGACCGTGGGAGAGGTGGGGACAGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCGTCCGATTCTGAGAAGTTACCGTGGCTTCTGGAGAAACTGCCCGAAACGATTGATCAAGGTGATACTTTAGTTTTTGCTTCCAAAAAAGCCACCGTGGATGAAATTGAATCGCAATTGAGTCAGAGAGGTTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAAGCTTCTCGTATGGATATTCTACAAAAGTTTAAATCCGGCACTTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATAAAGTCAATTAAAACCGTGGTAAACTTTGATATTGCTAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCCGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGATTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCAGGTCAGAATGTGTCGACGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATACAGGTCGAAACGGGATGCGAGAAAAGGAGGAGGTGGGAGGAAAGGCAAAGGCAGGGGTGGGGGTGCCGGTGGCAAAGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATTCTGCAGAGCCAAACAATGCATCATCTAACACAGTTCCAAGTCGGTCCGCTGCTGTTAATTCTCTGCGAACAGGAATGATGTCCCAATTTCGAAGCAGCTTTGTTGCTGCATCATCAACCTCCCAAAATGAAGGATTCAGTAATACTACAAGTGTGGCTGTTAATAAGAGACCAACACTCGCTGGCTTTGTATCTGGTGGATCAATTGGTGGCGATATAAATACTCGTCAGCAAACTGCTTCATACAATCCTGCTGCATCAGCCGTAAATTCCACCAGTCAAAGTTCTGGAGTTCCTGGTCAGAACAGCACAAACAGTTCTAAACCTAGAGAAAGGCGGAGGCCATCAGGTTGGGATAGATAG 2334 0.437 MSKRKFGFEGFGINRPSTYSFERSEAPQRLYVPPSSRKSHDNYEDNDLDNIEFDDDANEESNNNDDNSNTVKGGDGGEEEEIDPLDAFMEGIHEEMKAAPPPKPKEKLEDRYKDDEEDHMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHTEIDYEPFTKDFYEETPSISGMSEQDVTEYRKSLAIRVSGFDCPKPVKTFEDCGFASQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMQRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGTANEDITQVVQVIPSDSEKLPWLLEKLPETIDQGDTLVFASKKATVDEIESQLSQRGFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKDGRYRSKRDARKGGGGRKGKGRGGGAGGKGVRGVDFGLGIGYSAEPNNASSNTVPSRSAAVNSLRTGMMSQFRSSFVAASSTSQNEGFSNTTSVAVNKRPTLAGFVSGGSIGGDINTRQQTASYNPAASAVNSTSQSSGVPGQNSTNSSKPRERRRPSGWDR* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0453 777 MobiDBLite consensus disorder prediction 732 763 - -
Tpr6g0453 777 Gene3D - 196 438 IPR027417 -
Tpr6g0453 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 442 IPR027417 -
Tpr6g0453 777 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 233 261 IPR014014 GO:0003724
Tpr6g0453 777 MobiDBLite consensus disorder prediction 14 81 - -
Tpr6g0453 777 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 385 393 IPR000629 -
Tpr6g0453 777 SMART helicmild6 492 573 IPR001650 -
Tpr6g0453 777 Gene3D - 439 617 IPR027417 -
Tpr6g0453 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 613 IPR027417 -
Tpr6g0453 777 CDD DEADc_DDX42 244 440 - -
Tpr6g0453 777 MobiDBLite consensus disorder prediction 617 643 - -
Tpr6g0453 777 SMART ultradead3 252 454 IPR014001 -
Tpr6g0453 777 Pfam DEAD/DEAH box helicase 257 428 IPR011545 GO:0003676|GO:0005524
Tpr6g0453 777 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 662 - -
Tpr6g0453 777 MobiDBLite consensus disorder prediction 732 777 - -
Tpr6g0453 777 MobiDBLite consensus disorder prediction 47 62 - -
Tpr6g0453 777 Pfam Helicase conserved C-terminal domain 466 573 IPR001650 -
Tpr6g0453 777 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 613 IPR001650 -
Tpr6g0453 777 CDD SF2_C_DEAD 451 583 - -
Tpr6g0453 777 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 264 439 IPR014001 -
Tpr6g0453 777 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0453 Tpr-Chr6 3716015 3720116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0453 233 589 Eukaryotic Initiation Factors Gene Family AT3G13920 35.833 4.35e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0453 K12835 - gmx:100814854 1275.38