Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr6g0453 | ATGTCAAAAAGGAAGTTCGGATTCGAAGGTTTCGGCATAAACCGTCCATCAACCTACAGTTTCGAACGATCTGAAGCTCCTCAACGACTCTACGTTCCTCCTTCATCGCGTAAAAGTCACGACAACTACGAAGACAATGACCTCGATAACATCGAGTTCGATGATGATGCCAACGAAGAATCAAACAACAACGACGATAATAGTAACACCGTTAAAGGCGGTGATGGTGGTGAGGAAGAGGAAATCGATCCATTAGATGCTTTTATGGAAGGAATACACGAGGAGATGAAGGCGGCACCGCCTCCGAAGCCGAAGGAGAAGTTGGAAGATAGATACAAAGATGATGAAGAGGATCATATGGAGAGTTTTTTGAGGGCGAAAAAGGATTTAGGGTTGACGTTGGCGTCGGATGCCCTTCATGCTGGATATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTGGATGCTGGTTTGATTGATTATGATTCTGATGATAACCCTATTGTTCTTGATAAGAAGAAAATTGAACCTATAGCTCCTCTTGATCACACTGAAATTGATTATGAACCCTTTACTAAAGATTTTTATGAGGAGACACCTTCAATTTCAGGTATGAGTGAGCAAGATGTAACTGAATATAGGAAGAGTTTGGCTATTCGGGTATCGGGTTTTGATTGTCCTAAGCCAGTGAAAACATTTGAGGATTGTGGGTTTGCTTCACAAATTATGTCTGCTATAAAAAAACAAGGTTATGAGAAGCCCACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGTAGAGATATCATTGGCATAGCGAAAACTGGTTCTGGTAAAACTGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAGGGTCCTATTGGAGTGATATGTGCACCTACCAGAGAATTAGCACATCAGATATATCTCGAGGCGAAGAAATTTGCAAAAGCATATGGTATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTGAAAGCAGGCTGTGAGATAGTTGTTGCTACACCGGGGAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGCAAAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTCGATCTTGGATTTGAGCCACAAGTAAGGTCCATCGTTGGTCAGATTAGGCCGGACCGCCAAACTTTGCTCTTTTCTGCAACAATGCCTCGCAAAGTTGAGAAGTTAGCCAGGGAAATCCTTTCCGATCCTATTAGAGTGACCGTGGGAGAGGTGGGGACAGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCGTCCGATTCTGAGAAGTTACCGTGGCTTCTGGAGAAACTGCCCGAAACGATTGATCAAGGTGATACTTTAGTTTTTGCTTCCAAAAAAGCCACCGTGGATGAAATTGAATCGCAATTGAGTCAGAGAGGTTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAAGCTTCTCGTATGGATATTCTACAAAAGTTTAAATCCGGCACTTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATAAAGTCAATTAAAACCGTGGTAAACTTTGATATTGCTAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCCGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGATTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCAGGTCAGAATGTGTCGACGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATACAGGTCGAAACGGGATGCGAGAAAAGGAGGAGGTGGGAGGAAAGGCAAAGGCAGGGGTGGGGGTGCCGGTGGCAAAGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATTCTGCAGAGCCAAACAATGCATCATCTAACACAGTTCCAAGTCGGTCCGCTGCTGTTAATTCTCTGCGAACAGGAATGATGTCCCAATTTCGAAGCAGCTTTGTTGCTGCATCATCAACCTCCCAAAATGAAGGATTCAGTAATACTACAAGTGTGGCTGTTAATAAGAGACCAACACTCGCTGGCTTTGTATCTGGTGGATCAATTGGTGGCGATATAAATACTCGTCAGCAAACTGCTTCATACAATCCTGCTGCATCAGCCGTAAATTCCACCAGTCAAAGTTCTGGAGTTCCTGGTCAGAACAGCACAAACAGTTCTAAACCTAGAGAAAGGCGGAGGCCATCAGGTTGGGATAGATAG | 2334 | 0.437 | MSKRKFGFEGFGINRPSTYSFERSEAPQRLYVPPSSRKSHDNYEDNDLDNIEFDDDANEESNNNDDNSNTVKGGDGGEEEEIDPLDAFMEGIHEEMKAAPPPKPKEKLEDRYKDDEEDHMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHTEIDYEPFTKDFYEETPSISGMSEQDVTEYRKSLAIRVSGFDCPKPVKTFEDCGFASQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMQRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGTANEDITQVVQVIPSDSEKLPWLLEKLPETIDQGDTLVFASKKATVDEIESQLSQRGFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKDGRYRSKRDARKGGGGRKGKGRGGGAGGKGVRGVDFGLGIGYSAEPNNASSNTVPSRSAAVNSLRTGMMSQFRSSFVAASSTSQNEGFSNTTSVAVNKRPTLAGFVSGGSIGGDINTRQQTASYNPAASAVNSTSQSSGVPGQNSTNSSKPRERRRPSGWDR* | 778 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr6g0453 | 777 | MobiDBLite | consensus disorder prediction | 732 | 763 | - | - | |
Tpr6g0453 | 777 | Gene3D | - | 196 | 438 | IPR027417 | - | |
Tpr6g0453 | 777 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 216 | 442 | IPR027417 | - | |
Tpr6g0453 | 777 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 233 | 261 | IPR014014 | GO:0003724 | |
Tpr6g0453 | 777 | MobiDBLite | consensus disorder prediction | 14 | 81 | - | - | |
Tpr6g0453 | 777 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 385 | 393 | IPR000629 | - | |
Tpr6g0453 | 777 | SMART | helicmild6 | 492 | 573 | IPR001650 | - | |
Tpr6g0453 | 777 | Gene3D | - | 439 | 617 | IPR027417 | - | |
Tpr6g0453 | 777 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 380 | 613 | IPR027417 | - | |
Tpr6g0453 | 777 | CDD | DEADc_DDX42 | 244 | 440 | - | - | |
Tpr6g0453 | 777 | MobiDBLite | consensus disorder prediction | 617 | 643 | - | - | |
Tpr6g0453 | 777 | SMART | ultradead3 | 252 | 454 | IPR014001 | - | |
Tpr6g0453 | 777 | Pfam | DEAD/DEAH box helicase | 257 | 428 | IPR011545 | GO:0003676|GO:0005524 | |
Tpr6g0453 | 777 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 45 | 662 | - | - | |
Tpr6g0453 | 777 | MobiDBLite | consensus disorder prediction | 732 | 777 | - | - | |
Tpr6g0453 | 777 | MobiDBLite | consensus disorder prediction | 47 | 62 | - | - | |
Tpr6g0453 | 777 | Pfam | Helicase conserved C-terminal domain | 466 | 573 | IPR001650 | - | |
Tpr6g0453 | 777 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 464 | 613 | IPR001650 | - | |
Tpr6g0453 | 777 | CDD | SF2_C_DEAD | 451 | 583 | - | - | |
Tpr6g0453 | 777 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 264 | 439 | IPR014001 | - | |
Tpr6g0453 | 777 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 | 45 | 662 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr6g0453 | Tpr-Chr6 | 3716015 | 3720116 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr6g0453 | 233 | 589 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 35.833 | 4.35e-64 | 218 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr6g0453 | K12835 | - | gmx:100814854 | 1275.38 |