Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0448 ATGCTGGAGATTCAGAATGAACAACCGGAGCAGCAAAGATTCAACAATTTCACCGTAGAACCATCAAACTCTCAATTTCCCATCGACAACAACAATGGCATTGCTACTTTCCCTAATCACGCTAACGCATTCGATTCTGGATTTCTCCCTCCTCCGCCTCCTCCTTTTCCTCCTCCTCCTCACCACCATCATCCTAACTTCTCCATCCCTCCTCCTCCTCCTCCTCCTCCTAATCCTAACTTCTCCATTCATCCTCCTCCTCCTCCTCCTCCTCTACGCAAACGACCCTGGGGTGCTTCTTCAGTTACAGTTCCAGATCAAGTAGATGCTACGGGTCCTGTTAAAGTTTATGTTGCACCAGTTCCAAGAACAGCATCTGAGGCTGATATCCGCCTTGTGTTCGAAAGATATGGAACTATTGTTGAGGTTGTTCTTTTAAGGGATAAGAAAACCGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTCAATGAAGCTGACATGGCTATTAAGGCCTTAAGCAATCAATATACTTTTCCTGGAGAATCATTTCCTGTTGTTGTCAGATTTGCTGATCGAGATCGTGAACGTTTTGGGCTTCGAGGCTTCTGCCGAAACATGGAAAAGAAAGATTCTCCGGAAGTGGTGGATAAAGTTTTTGTTGGTAACATCAACAAAGAAACTTCAAGGCAGGAAATTGAAGAAATATTTTCCCCTTACGGGCATATAGAAGATGTCGTCATCTTGCCGAATCGTGGATATTGTTTTGTCAAATTTTCTAGTAGAGAGATGTCATTGGCAGCAATCAAAGGCTTGAATAGAACATTCACGATGAGAGGTTGTGATCAACCAATAATTGTTCGTTTTGCGGAACCTAAGAAACCTAAGATGGGAGAATCAAGGGGAAACTACTTACCTGCAAATGCAAATTATGGTCCCAATTCTCAAGAACCAGCAGTTTGGCCACTGCCAAATTTTTGTGATCCCAATACTGGAGGGAATATTATGCATAATGGTCCACATCACTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCAAACTGGGAACCTGGTGCTACTGTTGTACAGCAACAATTTCTTCCCCAACATGCACATTCACATTTGGCTTCAATGCCTTTGCGGCCAATTCAAGCTCCCACCTTGCCTTCTCAACCGTTTAATACTGAGGTGCAAAGACAGTTTCATCCGGCAGATTTGCCGGTCCGAAATATAGAGCAGCAGCTAAGTTCTCAGCTGCCTGCTCAGACTGAACGTAACAATACAGTTGCTGGAAGTACCTCATCTGATCTGTCTTCAAATAACCAAGACGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCTGATGGTAACAAGTACTACTACAACTGCGTCACTTGCGAAAGCAGATGGGAAAAGCCTGAGGAGAATGCTTTGTATGACAAAGAATCACAGAAGCAACATGAGCAAGATGATCATAGCTTGCTCCAACCGCAATTGTCATTATCTTCCTCTCAAGAAGTTTCTCAAACGCAACAGGAAACAAATCACGATCACATGCAGTCAGAAACAAATCCTGTTGTTGAACAGGTGTGA 1614 0.4362 MLEIQNEQPEQQRFNNFTVEPSNSQFPIDNNNGIATFPNHANAFDSGFLPPPPPPFPPPPHHHHPNFSIPPPPPPPPNPNFSIHPPPPPPPLRKRPWGASSVTVPDQVDATGPVKVYVAPVPRTASEADIRLVFERYGTIVEVVLLRDKKTGARQGSCLVKYSTFNEADMAIKALSNQYTFPGESFPVVVRFADRDRERFGLRGFCRNMEKKDSPEVVDKVFVGNINKETSRQEIEEIFSPYGHIEDVVILPNRGYCFVKFSSREMSLAAIKGLNRTFTMRGCDQPIIVRFAEPKKPKMGESRGNYLPANANYGPNSQEPAVWPLPNFCDPNTGGNIMHNGPHHSRLPHQQVNAHMPNWEPGATVVQQQFLPQHAHSHLASMPLRPIQAPTLPSQPFNTEVQRQFHPADLPVRNIEQQLSSQLPAQTERNNTVAGSTSSDLSSNNQDEDFPECDWSEHYCPDGNKYYYNCVTCESRWEKPEENALYDKESQKQHEQDDHSLLQPQLSLSSSQEVSQTQQETNHDHMQSETNPVVEQV* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0448 537 Pfam WW domain 453 480 IPR001202 GO:0005515
Tpr6g0448 537 SMART ww_5 450 482 IPR001202 GO:0005515
Tpr6g0448 537 MobiDBLite consensus disorder prediction 422 450 - -
Tpr6g0448 537 SUPERFAMILY WW domain 454 483 IPR036020 GO:0005515
Tpr6g0448 537 MobiDBLite consensus disorder prediction 500 537 - -
Tpr6g0448 537 PANTHER RNA BINDING PROTEIN 92 517 - -
Tpr6g0448 537 CDD WW 453 482 IPR001202 GO:0005515
Tpr6g0448 537 MobiDBLite consensus disorder prediction 486 537 - -
Tpr6g0448 537 MobiDBLite consensus disorder prediction 1 43 - -
Tpr6g0448 537 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 92 517 - -
Tpr6g0448 537 ProSitePatterns WW/rsp5/WWP domain signature. 455 480 IPR001202 GO:0005515
Tpr6g0448 537 SUPERFAMILY RNA-binding domain, RBD 220 314 IPR035979 GO:0003676
Tpr6g0448 537 SUPERFAMILY RNA-binding domain, RBD 79 203 IPR035979 GO:0003676
Tpr6g0448 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 294 IPR000504 GO:0003723
Tpr6g0448 537 MobiDBLite consensus disorder prediction 422 449 - -
Tpr6g0448 537 SMART rrm1_1 220 290 IPR000504 GO:0003723
Tpr6g0448 537 SMART rrm1_1 115 191 IPR000504 GO:0003723
Tpr6g0448 537 Gene3D - 206 301 IPR012677 -
Tpr6g0448 537 Gene3D - 106 200 IPR012677 -
Tpr6g0448 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 195 IPR000504 GO:0003723
Tpr6g0448 537 Gene3D - 435 501 - -
Tpr6g0448 537 MobiDBLite consensus disorder prediction 1 39 - -
Tpr6g0448 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 183 IPR000504 GO:0003723
Tpr6g0448 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 279 IPR000504 GO:0003723
Tpr6g0448 537 ProSiteProfiles WW/rsp5/WWP domain profile. 455 482 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0448 Tpr-Chr6 3664804 3672314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0448 116 372 Eukaryotic Initiation Factors Gene Family AT1G71770 23.194 8.28e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0448 K13207 - gmx:100776162 625.165