Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0421 ATGGAAGCTTTTCAACTGTACGGTAATGGTACTGGTACTGGTGGTGGTGGTTCCTCTGATTTAAGGCCTATGGAGAAAAGATCAGACTGGGATTTGAATAATTGGAATTGGGATGGTCATCTTTTTTTAGCTACTAGTAAATTGACTCCTGTTCCAGAACATAGACAGTTTTTACCTCTTCCTGTTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGTTCGTCTAATTCGAATAGTTCATCTTCTTGTTCTGAACAGTTAGATCTTGGGATTTGTCAAGGGAACAAGGAAGGTGAGAGGAAGAGGAGGGTTATTGTTGTGGAGGATGATGAACTTGGTTTGAATAAGGAAGGTGCTAGTTTAAGTTTGAATCTTGGTGGTGGTGGTGGTAGTGGTAGTGGTGTTCAGGTGGCTGCTACATGGGAAGGAAATATTGGGAAGAAAAGTAGAGTAGCAGCTGGTGGAGGTAGTTCTAGTAGAGCATTTTGTCAGGTGGAGGATTGTCGCGCAGATCTCAACAACGGGAAAGATTATCATAGACGTCATAAAGTTTGTGAGATACACTCCAAGGCTAGTAAGGCACTTGTCGGAAATGCTATGCAGAGGTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGGAGACGTTTGGCTGGCCATAATAAAAGAAGGAGAAAAACAAATCAGGATGCTGTTCCTAATGGAAGTTCACCGAACGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCAGCCTGACAGGTCAAATCAGACCGCAGATCAGGATCTGCTTACTCATCTTTTAAGGAGTCTTGCCAATCAGAATGGTGGACAAGGGGGAAGGAACTTGTCTAACCTTTTACGGGAACCTGAGAATCTGTTGAAAGAAGGGTCTTCATCTGGGAAGTCTGAGATGGTTTCTACTTTATTAACGAATGGTTCTCAAGGTTCTCCAACTGTTACAGTACAGAATCAAGCAGTTTCTATTAGTGAAATTCAGCATCAAGTGGTGCATACACATGATGCTAGGGCTGCTGATCAACAAACCACATCCTCTGCAAAGCCCGGTGTTTCAAACAGCCCTCCGACTTACTCAGAAGCAAGAGACAGTACTGCTGGACAGGCCAAGATGAATGATTTTGATCTGAATGACATCTATATTGACTCAGATGATGGCATAGAGGATATAGAAAGGTTGCCTGTCACTGCAAATATTATTACTAGTTCTCTTGATTACCCATGGATGCAACAGGATTCACATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCTCAGTCCCCCTCTAGCTCCACTGGCGAAGCTCAGAATCGCACGGATCGGATTGTTTTTAAACTCTTCGGTAAAGAACCAAGCGATTTTCCTCTTGTAATCAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCAACTGATATTGAAGGCTATATACGGCCTGGTTGTATCGTTTTGACTATTTATCTGCGTCAGGCTGAGGATGTGTGGGAGGAGCTTTGCTTAGATCTGACTTCCAGTTTGAATAGCCTTCTGGATGTCTCAGATGATGATTTTTGGAGAACTGGATGGGTTCACATCCGGGTGCAGCATCAGATGGCCTTCATTTTCAACGGCCAGGTTGTCATCGATACATCCCTACCTTTCAGGTGTAACAATTATAGTAAAATTTTGAGTGTTAGCCCAATTGCTGTACCAGCATCAAAGACAGCTCAGTTTTCTGTGAAGGGTATCAACCTGACTCGTCCTGCCACTAGGTTATTGTGTGCCTTAGAAGGGGATTACTTGGTCTGTGAAGATACTCATGAGTCTATGGATCAGTGCTCCAAGGATCTTGATGAGCTTCAGTGCGTCCAATTTTCATGTTCTGTCCCTGCGATGAATGGGCGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGCAGCAGTTTTTTTCCTTTCATAGTTGTGGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAGCCTTTATTGGAATCAAGTGATACTTATCCAGATGTGGAAGGGGCTGGAAAAATTCAAGCAAAAAATCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAGATAAAATCTAGGACGGTTCACTTGAATTCTAGTGTGGATCTGTTTCCATTAGATCGATTCAAATGGCTCGTGGAGTTTTCTGTGGACCATGATTGGTGTGCAGTAGTTAAAAAGCTATTGAACCTCATGCTTGAGGGAACTGTGAGTACAGGAGACCACACGTCCCTCTATCTTGCACTTTCAGAGTTGGGTCTCCTTCACAGAGCTGTGAGGAGAAATAGCAGGCAGTTGGTGGAGCTTCTTTTGAGATATGTCCCTCAAAATGTTTCAGATAAACTAGGACCTGAAGACAAGGCGCTGGTTAATGGAGGGAATAAAAACTTCTTGTTTAGACCTGATGCTGCCGGTCCTGCTGGTCTGACACCACTCCATATTGCAGCCGGGAAAGATGGTTCTGAGGATGTACTTGATGCTTTGACTAATGATCCTTGCATGGTGGGAATTGAAGCGTGGAATAGTGTTCGTGACAGCACGGGTTCAACACCTGAGGATTATGCACGTTTACGTGGTCATTACACTTATATTCACTTGGTGCAGAAGAAAATCAACAAGAGACAAGGAGGGGCTCATGTGGCGGTTGACATTCCTAGCAATCTGACAATGTTTGATACAAGTCAGAAGAAAGATGAATCATCCACCACCTTTGAAATTGGAAATGCTGATGTTAGAAGTCTCCAAAAGAACTGCAAACTTTGTGATCGTAAGTTATCGTGTAGAACTGCTGTAAGGAAGTCTTTCGCATACAGACCTGCAATGCTGTCAATGGTGGCCATAGCTGCGGTCTGTGTCTGTGTGGCTCTTCTGTTCAAAAGCTCGCCCGAAGTTCTGTATATATTCCGACCTTTCAGGTGGGAATCGTTGGAGTATGGAACAAGCTGA 3060 0.4373 MEAFQLYGNGTGTGGGGSSDLRPMEKRSDWDLNNWNWDGHLFLATSKLTPVPEHRQFLPLPVGGGGGGGGGGSSNSNSSSSCSEQLDLGICQGNKEGERKRRVIVVEDDELGLNKEGASLSLNLGGGGGSGSGVQVAATWEGNIGKKSRVAAGGGSSSRAFCQVEDCRADLNNGKDYHRRHKVCEIHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGSSPNDDQTSSYLLISLLKILSNMQPDRSNQTADQDLLTHLLRSLANQNGGQGGRNLSNLLREPENLLKEGSSSGKSEMVSTLLTNGSQGSPTVTVQNQAVSISEIQHQVVHTHDARAADQQTTSSAKPGVSNSPPTYSEARDSTAGQAKMNDFDLNDIYIDSDDGIEDIERLPVTANIITSSLDYPWMQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQNRTDRIVFKLFGKEPSDFPLVIRAQILDWLSHSPTDIEGYIRPGCIVLTIYLRQAEDVWEELCLDLTSSLNSLLDVSDDDFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFRCNNYSKILSVSPIAVPASKTAQFSVKGINLTRPATRLLCALEGDYLVCEDTHESMDQCSKDLDELQCVQFSCSVPAMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLESSDTYPDVEGAGKIQAKNQAMDFIHEMGWLLHRSQIKSRTVHLNSSVDLFPLDRFKWLVEFSVDHDWCAVVKKLLNLMLEGTVSTGDHTSLYLALSELGLLHRAVRRNSRQLVELLLRYVPQNVSDKLGPEDKALVNGGNKNFLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWNSVRDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGGAHVAVDIPSNLTMFDTSQKKDESSTTFEIGNADVRSLQKNCKLCDRKLSCRTAVRKSFAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWESLEYGTS* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0421 1019 Gene3D - 152 223 IPR036893 GO:0003677|GO:0005634
Tpr6g0421 1019 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 1018 IPR044817 GO:0003677
Tpr6g0421 1019 MobiDBLite consensus disorder prediction 354 393 - -
Tpr6g0421 1019 SUPERFAMILY Ankyrin repeat 789 905 IPR036770 -
Tpr6g0421 1019 MobiDBLite consensus disorder prediction 433 464 - -
Tpr6g0421 1019 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 18 1018 - -
Tpr6g0421 1019 MobiDBLite consensus disorder prediction 226 249 - -
Tpr6g0421 1019 Gene3D - 763 920 IPR036770 -
Tpr6g0421 1019 SUPERFAMILY SBT domain 160 240 IPR036893 GO:0003677|GO:0005634
Tpr6g0421 1019 Pfam SBP domain 162 235 IPR004333 GO:0003677
Tpr6g0421 1019 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Tpr6g0421 1019 MobiDBLite consensus disorder prediction 359 389 - -
Tpr6g0421 1019 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0421 Tpr-Chr6 3431314 3437508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0421 26 1019 SBP-box Gene Family AT3G60030 53.617 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr6g0421 SBP 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0421 - - gmx:100809806 1496.49