Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0420 ATGTCTGAGCAAATTTCCATTGGAAACGATGAGAACAGAAAGCTCAAGCGTAGAATAGAGGAGCACTCAGAGTCGAGACCTGAGAAGGAATCGAAGGTCATGTCATCGACCTCTGAATCCAATGCTGAAGATTTACTTAATCTAAGCCTTGGCATTCACACCAAGTCCTCTATCAAATCCTTGGAGATTGGTGAACATTCACATTCATCTCAAAATGTCGTTGTTGAACCTTTACCCCAAACCGTTGATGTCGAACCTTTAAATGACGAGCAAAAAGTGACGGAATTTTCTTGTCCTTATTGTGATAAGAAATATTCCACTCCTCAAGCACTTGGAGGACACCAAAACGCTCATAAGCGTGAGCGTGCCTTCATAAAAATGGAAAAACAGAGGAGGGAAGATGAACTGATTTCAAATCTTAGATTTAGATCTGTTCATCAACCATACCCTTATCCAATTTCAAGCCCTAATCACTACCAAGGGTATTCTTATTTAGGTAGTGCTAACTTGCACCACCCAATTAGTCACCATACGAACAATACCATGCCTTCTTGGGCTAGTGGTTCTTCTTATGGTGGCTATGGAGGGTTGTATATGCCAAATACACCCCCCACAATACCCCAACTTGCAATGCGAATGCCAAGTTCATCCCTCACAACAATAGGGACAACAAATTTTTTGGGCGGAGGTCAAAATATTGCATTACCAATTCCACAAAGGTCGGACACTTCGGGTTTGGAACTCTTTGCTCAAGCTAATCAAACCCCTTTAATTGCTGAGCCTCATACTAGTCCTATTGGAGAAGGCCTAATTCAAACAAATTCAAACAGGTCTTCATCGTCAACTCAATCAACCTCGAAGGAGCTGAACTTGGATTTCACCCTTTAA 888 0.4178 MSEQISIGNDENRKLKRRIEEHSESRPEKESKVMSSTSESNAEDLLNLSLGIHTKSSIKSLEIGEHSHSSQNVVVEPLPQTVDVEPLNDEQKVTEFSCPYCDKKYSTPQALGGHQNAHKRERAFIKMEKQRREDELISNLRFRSVHQPYPYPISSPNHYQGYSYLGSANLHHPISHHTNNTMPSWASGSSYGGYGGLYMPNTPPTIPQLAMRMPSSSLTTIGTTNFLGGGQNIALPIPQRSDTSGLELFAQANQTPLIAEPHTSPIGEGLIQTNSNRSSSSTQSTSKELNLDFTL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0420 295 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Tpr6g0420 295 Gene3D Classic Zinc Finger 80 147 - -
Tpr6g0420 295 MobiDBLite consensus disorder prediction 1 41 - -
Tpr6g0420 295 MobiDBLite consensus disorder prediction 9 33 - -
Tpr6g0420 295 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 211 IPR044246 GO:0009788
Tpr6g0420 295 Coils Coil 12 32 - -
Tpr6g0420 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Tpr6g0420 295 SUPERFAMILY beta-beta-alpha zinc fingers 95 124 IPR036236 -
Tpr6g0420 295 MobiDBLite consensus disorder prediction 274 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0420 Tpr-Chr6 3417050 3417937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0420 85 175 C2H2 Transcription Factor Family AT1G24625 41.000 1.14e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g0420 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0420 - - cam:101490368 204.142