Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0418 ATGAAAGAAAATCCATTCTCTTCAGCAAAAACTTCAGTCTGGTGGGACATAGAAAACTGTCAAGTCCCCAAAAACTTCAACCCTAACACCATCGCTATAAACATCACCTCCGCCCTCATCAATTCCAACTTCCACGGCCCCATCTATATCTCCGCTTACGCCGACACCACTGGTATCCCTTCTCACGTTCAACAGGCTATCACTTCCACAGGTGTCACCCTCAACCATGTCCCCGCCGGTGGGAAAGTTGATAAGAATATACTTGTTGATATGATACTATGGGCTATTGATAATCCTGCACCTGCAAATTATTTGTTGATTTCTGGTAATAGAGTTTTTTCAAATGCCCTTCATAATCTTCGTATGAGAAGCTATAATATTCTTCTTGCTCACCCTTTTTGTGCTTCCCAAACTCTTGTCGCCGCCGCTAACTTTGTTTGGTCTTGGCATACACTTATTTCCGGCGGTCCCCCTCACAACAATGCTACAAATCAAAACCCTAATTTCTCTGATAAACTCATTTATCAACCTAAACCAAATTCAATAGAATCTGTTCAAATTCAAGAACCAGATAGTGATGATAACAACAATGATAGCTCTGCTGAACAATCAAAGTCGTCAAAACTTGTTGATGGTATTCTAGTAACATTGAATACACTCAAGAATGAAATGATTCTTCCAACTAAAGGAAATATAACTGATTGTATTCGTTACGGTGATCCTAAGTATCAAAAAATTGATGTTGAAAAGGCTTTGGATTGTGCAATTGAGCAACGGAGGGTAGTTAAACAATGCTGTGGTCCATTACATTTGTATGTTGTTGCGAATGAGAAACTATGGAAGTGTGTGAATCCTTTGGGTGGATCACCGAGTCATTTCCCCACAACAATTTGGGTTAGAATAGAGAAGTTCCTTGCTTCATCCTCAGGAAGATTGGCAATTTTGGCTTCTCCTAGCAGATATGAAGCATCTTTAATTCTTAAGAGATTGTGCCTTGAAGAGCTTGTGTTGGGTGATGTACTTAAAATATTGGAGATTATAATCACAACTAAGAAATGGATTATACCTGATTATCATTCTAAATGGCAGCCAATTAGCATTTCACTTCCAGAGGCTAAAGATGATAATTGA 1131 0.3899 MKENPFSSAKTSVWWDIENCQVPKNFNPNTIAINITSALINSNFHGPIYISAYADTTGIPSHVQQAITSTGVTLNHVPAGGKVDKNILVDMILWAIDNPAPANYLLISGNRVFSNALHNLRMRSYNILLAHPFCASQTLVAAANFVWSWHTLISGGPPHNNATNQNPNFSDKLIYQPKPNSIESVQIQEPDSDDNNNDSSAEQSKSSKLVDGILVTLNTLKNEMILPTKGNITDCIRYGDPKYQKIDVEKALDCAIEQRRVVKQCCGPLHLYVVANEKLWKCVNPLGGSPSHFPTTIWVRIEKFLASSSGRLAILASPSRYEASLILKRLCLEELVLGDVLKILEIIITTKKWIIPDYHSKWQPISISLPEAKDDN* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0418 376 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 205 357 - -
Tpr6g0418 376 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 3 206 - -
Tpr6g0418 376 PANTHER LIMKAIN B LKAP 205 357 IPR024768 GO:0005777|GO:0010468|GO:1903231
Tpr6g0418 376 PANTHER LIMKAIN B LKAP 3 206 IPR024768 GO:0005777|GO:0010468|GO:1903231
Tpr6g0418 376 Pfam NYN domain 10 147 IPR021139 GO:0004540
Tpr6g0418 376 CDD PIN_limkain_b1_N_like 10 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0418 Tpr-Chr6 3406957 3408346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0418 3 158 C2H2 Transcription Factor Family AT5G61190 65.190 6.52e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0418 - - mtr:MTR_7g110390 266.544