Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0417 ATGTCAGGAAAGATAATTATATCTATTGTTTCTCTTATACTTATTGTAGGTGTTGCCATCGGTGTTGTTGTTGTTGTTCACAAAAAAGGTGAAGATCCTGAGATTCAAACTCAACAAAGATCTCTTAGAGTTATTTGCCAAAATGCAGAAGACCAAAAACTCTGCTATGAAACTCTAAGCTCTGTCCGTGGCGCCGACGCTGCAGATCCTAAGGCATACTTAGCGGCTGCTTTGAAAGCAGCCACTGACAATGTCATTAAGGCATTTAACATGAGTGATAGACTCACTGTTGAGTACGGCGACAAGGATATGCACACCAAGATGGCTCTTGATGGCTGCAAAGAGATGATGGAGTTTGCTTTGGACAGTCTTGATCTCTCCACCACTGTGGTTCGTGACAAAAACATTCTATCTGTTCATGCTCAATATGCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATGAAAAGGAGGTTGAGAAGAAGATTAAGGATCAATTGCATACTCAGACTATAGACCGCGCGACAAAGGTCACCGTTGTGGCTCTTGACATTGTGTCTGATTTGTCCAACATACTCCAAGAATTCGGTTTGAAATTGGATCTCAAACCTGCCTCTCGTCGTCTTCTATCTGGGGAAATTGATAATGAGGAAGGATTCCCTACATGGGTCTCTGCTACTGATCGCATGCTTTTGGCTCAAATGCAAAGAAACAATTGGAGATCAACAATTAAGCCCAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATATATAACAGTTAAGGGTGCTATTGAATCTTACCCTAAGGGATACAAAGGAAGATATATTATCTACGTTAAGGCTGGTGTCTATGACGAGTACATCACTGTCCCCAAATATTGCACTAATTTGACTATCTATGGTGATGGCCCTCAACAGACCGTTATCACTGGTCAAAAGAGTGGTAACAAGAATGGTATCAAAACCAATTATACCACCATGTATACCGCCACCTTTGCCAACACAGCACCTGGGTTCATTGCAAAGGCAATAAAATTTGAGAACACAGCCGGTCCTAATGGTCATCAAGCTGTAGCTTTCAGAAACCAAGGAGATTTGTCTGCTATTGTTGGTTGTCATTTCATTGGTTACCAAGACACCTTGTACGTTCAGACCAACAGACAATTCTACCGCAACTGTTTTATCTCTGGTACCATCGATTTCATCTTTGGAACGTCTAGCACCTTGATCCAACGCTCTGAGATCCAAGTAAGGATGCCCAACAACGACCAATTCAACACAATTACCGCAGATGGATCAGAAACTTCCAAGAAGACGAACACTGGTATTGTGATCCAGGACTGCCAGATCGTCGCAGAGGAAGCATTGGTAAAGTCCCAACTCAGATCTTACTTGGGCAGGCCATGGAAGATAAATTCAAGGACAGTCTTCATGGAATCCACCATCGGTGGCTTTATTAGTTCAGATGGATGGATCCCTTGGAAAAATAATGTCACTGGTCTTGATGAAAATTTCGACACATGTTACTATGCAGAGTATGCCAACACTGGACTTGGTGCCAATATTTCCGGAAGGATCAAGTGGAAGGGTTATCACAGTGCCATTAGCATGGCTGAGGCTAAAAATTTCACCGCTGCTGAATGGCTCAAGGCTGAAAACATGTCCACATCCACCTGGTTGCATGATCTTCATGTTCCTCACTACCTTGGCTTCAAAGCTTGA 1758 0.4283 MSGKIIISIVSLILIVGVAIGVVVVVHKKGEDPEIQTQQRSLRVICQNAEDQKLCYETLSSVRGADAADPKAYLAAALKAATDNVIKAFNMSDRLTVEYGDKDMHTKMALDGCKEMMEFALDSLDLSTTVVRDKNILSVHAQYADLRNWLSAVISYKQACMEGFDDEKEVEKKIKDQLHTQTIDRATKVTVVALDIVSDLSNILQEFGLKLDLKPASRRLLSGEIDNEEGFPTWVSATDRMLLAQMQRNNWRSTIKPNVVVAKDGTGQYITVKGAIESYPKGYKGRYIIYVKAGVYDEYITVPKYCTNLTIYGDGPQQTVITGQKSGNKNGIKTNYTTMYTATFANTAPGFIAKAIKFENTAGPNGHQAVAFRNQGDLSAIVGCHFIGYQDTLYVQTNRQFYRNCFISGTIDFIFGTSSTLIQRSEIQVRMPNNDQFNTITADGSETSKKTNTGIVIQDCQIVAEEALVKSQLRSYLGRPWKINSRTVFMESTIGGFISSDGWIPWKNNVTGLDENFDTCYYAEYANTGLGANISGRIKWKGYHSAISMAEAKNFTAAEWLKAENMSTSTWLHDLHVPHYLGFKA* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0417 585 PANTHER PECTINESTERASE 3 583 - -
Tpr6g0417 585 PANTHER PECTINESTERASE 3 583 - -
Tpr6g0417 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 199 IPR035513 -
Tpr6g0417 585 Pfam Pectinesterase 258 563 IPR000070 GO:0030599|GO:0042545
Tpr6g0417 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Tpr6g0417 585 SMART PMEI_2 37 196 IPR006501 GO:0004857
Tpr6g0417 585 CDD PMEI-like_3 45 202 - -
Tpr6g0417 585 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Tpr6g0417 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 33 175 IPR006501 GO:0004857
Tpr6g0417 585 Gene3D - 252 582 IPR012334 -
Tpr6g0417 585 SUPERFAMILY Pectin lyase-like 253 564 IPR011050 -
Tpr6g0417 585 Pfam Plant invertase/pectin methylesterase inhibitor 43 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0417 Tpr-Chr6 3402886 3404948 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0417 1 583 Carbohydrate Esterase AT2G47030 37.864 6.87e-123 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0417 K01051 - gmx:100781507 670.618