Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0415 ATGTCAGGAAAGATAATTATATCTGTTATTTCTCTTATTCTTGTTGTAGGTGTTGCTATCGGTGTTGTTGTTGTTGTTCACAGAAAAGGTGAAGATCCTGAGATTCAAACTCAACAAAGATCTCTTAGAGTTATTTGCCAAAATGCAGAAGACCAAAAACTCTGCCATGAAACTCTTAGCTCTATCCGTGGCGCTGACGCTTCAGATCCTAAGGCATACATAGCGGCTGCAGTGAAAGCAGCCACTGACAATGTCATTAAGGCATTTAACATGAGTGATAGACTCATTGTTGAGTACGGCGACAAGGATAGGCACACCAAGATGGTTCTTGCTGGCTGCAAAGAGATGATGGAGTTTGCTTTGGACAGTCTCGATCTCTCCACCACTGTGGTTCGTGACAAAAACATTCAATCTGTTCATGCTCAACATGCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATGAAAATGAGGTTGAGAAGAAGATGAAGGATCAATTGCATGCTCAGACTATAGACCGCGCGACAAAGGTCACCGTTGTTGCTCTTGACATTGTGTCTGATTTGTCCAACATACTCCAGGAATTCGGTTTGAAGTTAGATCTCAAACCTGCCTCTCGTCGTCTTCTATCTAAGGAAATTGATATCGAGGAAGGATTCCCTACCTGGGTCTCTGCTACTGATCGCAAGCTTTTAGCTCAAAAGCAAGGAAAAAGATGGAGATTGAAAATTAAGCCTAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATTTAAAACAATTACGGATGCTCTTAATCACTGCCCAAAGGGAAACGAAGGAAGATATGTTATGTACGTTAAGGCTGGTGTCTATGACGAGCAAATCACTGTCCTCAAAGATTGCCGTAACTTGCTTATGTACGGCGATGGCCCTCGAAAGACCATTATAACCGGTAGTAAGAACGAAGCCAAGGATAAAATTGATATCAATCATGGCGCCAGCTTTGGCAACGATGCAGAGCGGTTTATTGCAAGGGACATGACATTTGAGAACACAGCTGGTCCTGATGGCGAACAAGCTGTTGCTTTGAGAAACCTAGGAGATATGTCTGCTTTCATTGGTTGCAAAATCGTAGGTTACCAAGACACCTTGTACGCTCAATCCAATAGGCAATTCTACCGCAACTGTGAGATCTCTGGTACCATCGATTTCATCTTTGGAATGTCTAACACCTTGATCCAACACTCTACGATCATCGTAAGGAAGCCCATGCAGGGTCAATTCAACGCAATTACCGCAGACGGATCAGAAGATTCCAAGAAGTTGAACACTGGTATTGTGATCCAGGACTGCAAGATCGTCGCAGAGCGTGAATTGTTCCCTGTAAGGCACCAAATCCAAACTTACTTGGGCAGGCCATGGAAGACAAATGCAAGGATAGTCTTCATGGAATCCATCATGGGTGACTTTATTAATCCAGATGGATGGGTCGCTATGAAAGCTAAGGACGGTACTGATCTATATTTGGACACATGTTACTTAGCAGAGTATGACAACACTGGACTTAGTGCCGATACTTCCAGAAGGATCAAGTGGAAGGGATATCGTGGTAAGATTAGCCGGGACGAGGCTAGAAACTTCACCGCTGCTAATTGGCTCCAGGCTGAAAACACTTCTGCAGCCACCTGGTTGAATGTTCTTGATGTTCCTCACTACCTTGACTTCAAAGTTGGAAATTAA 1755 0.4359 MSGKIIISVISLILVVGVAIGVVVVVHRKGEDPEIQTQQRSLRVICQNAEDQKLCHETLSSIRGADASDPKAYIAAAVKAATDNVIKAFNMSDRLIVEYGDKDRHTKMVLAGCKEMMEFALDSLDLSTTVVRDKNIQSVHAQHADLRNWLSAVISYKQACMEGFDDENEVEKKMKDQLHAQTIDRATKVTVVALDIVSDLSNILQEFGLKLDLKPASRRLLSKEIDIEEGFPTWVSATDRKLLAQKQGKRWRLKIKPNVVVAKDGTGQFKTITDALNHCPKGNEGRYVMYVKAGVYDEQITVLKDCRNLLMYGDGPRKTIITGSKNEAKDKIDINHGASFGNDAERFIARDMTFENTAGPDGEQAVALRNLGDMSAFIGCKIVGYQDTLYAQSNRQFYRNCEISGTIDFIFGMSNTLIQHSTIIVRKPMQGQFNAITADGSEDSKKLNTGIVIQDCKIVAERELFPVRHQIQTYLGRPWKTNARIVFMESIMGDFINPDGWVAMKAKDGTDLYLDTCYLAEYDNTGLSADTSRRIKWKGYRGKISRDEARNFTAANWLQAENTSAATWLNVLDVPHYLDFKVGN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0415 584 Pfam Plant invertase/pectin methylesterase inhibitor 43 196 IPR006501 GO:0004857
Tpr6g0415 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Tpr6g0415 584 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Tpr6g0415 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 198 IPR035513 -
Tpr6g0415 584 Gene3D - 252 576 IPR012334 -
Tpr6g0415 584 CDD PMEI-like_3 45 202 - -
Tpr6g0415 584 PANTHER PECTINESTERASE 3 576 - -
Tpr6g0415 584 PANTHER PECTINESTERASE 3 576 - -
Tpr6g0415 584 SMART PMEI_2 37 196 IPR006501 GO:0004857
Tpr6g0415 584 SUPERFAMILY Pectin lyase-like 255 563 IPR011050 -
Tpr6g0415 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 176 IPR006501 GO:0004857
Tpr6g0415 584 Pfam Pectinesterase 258 560 IPR000070 GO:0030599|GO:0042545
Tpr6g0415 584 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0415 Tpr-Chr6 3395736 3397815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0415 1 575 Carbohydrate Esterase AT2G47030 37.705 2.93e-127 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0415 K01051 - gmx:100781507 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2303 1 25892965 25896568 Tpr6g0415 6 3395736 3397815 PCT