Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0414 ATGTCAGGAAAGATAATTATATCTGTTATTTCTCTTATTCTTGTTGTAGGTGTTGCCATCGGTGTTGTTGTTACTGTTCACAAAAAAGGTGAAGATCCTGAGATTCAAACTCACCATAGATTTCTTAGAGTTATTTGCCAAAATGCAGAAGACCAAAAACTCTGCCATGAAACTCTTAGCTCTATCCGTGGCGCCGACGCTTCAGATCCTAAGACATACATAGCGGCTGCAGTGAAAGCAGCTACTGACAATGTCATTAAGGCATTTAACATGAGTGATAGACTCATTGTTGAGTACGGCGACAAGGATAGGCACACCAAGATGGTTCTTGCTGGCTGCAAAGAGATGATGGAGTTTGCTTTGGACAGTCTTGATCTCTCCACCACTGTGGTTCGTGACAAAAACATTCTATCTGTTCATGCTCAACATGCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATGAAAATGAGGTTGAGAAGAAGATTAAGGATCAAATGCATGCTCAGACTATAGACCGCGCGACAAAGGTCACCGTTGTTGCTCTTGACATTGTGTCTGATTTGTCCAACATACTCCAGGAATTCGGTTTGAAGTTAGATCTCAAACCTGCCTCTCGTCGTCTTCTATCTGAGGAAATCCATAACGAGCAAGGATTCCCTGCATGGGTCTCTGCTACCGATCGCAAGCTTTTGGCTAAAATGCAAGGAAAAGGATGGAGATCAAAAGTTAAGCCTAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATTTAAAACAATTATGGATGCTATTAATTCTTACCCTAAAGGAAACAAAGGAAGATATATTATCTACGTTAAGGCTGGTGTCTATGACGAGCAAATCACTGTCCTCAAAGATTGCCGTAACTTGCTTATGTACGGCGATGGCCCTCGAAAGACCATTATAACCGGTAGTAAGAACGAAGCCAAGGATAAAATTGATATCAATCATGGCGCCAGCTTTGGCAACGATGCAGAGCGATTTATTGCAAGGGACATGACATTTGAGAACACAGCCGGTCCTGATGGCAAACAAGCTGTTGCTTTGAGAAACCTAGGAGATATGTCTGCTTTCGTTGGTTGCGAAATCAAAGGTTACCAAGACACCTTGTACGCTCAATCCAATAGGCAATTCTACAGCAACTGTGTTATCTCTGGTACCATCGATTTCATCTTTGGAATGTCTAGCACCTTGATCCAAGACTCTAAAATCATCGTAAGGAAGCCCAAGAGCGATCAATCCAACGTAATTACCGCAGATGGAACCGTAGATTCTCAGTATACGAACACTGGTATTGTGATCCAGGGCTGCGAGATCGTCACAGATGAAGATTTGGTAAAGTCCCAAATCAGATCTTACTTGGGCAGGCCATGGAAGCCATATTCAAGGATGGTCTTCATGGAATCCACCATCGGTGACTTTATTCATCCAGATGGATGGACCCCTTGGATAAAGGATGGTATTGAGATAAATATGGATTTATGTTACATAGCAGAGTATGCCAACACTGGACCCAGTGGCAACATAGGACCTGGTGCCGATGTTTCCAAAAGGATCAAGTGGAAGGGTTATCGCGGTCTCATTAGCCGGGATGAGGCTGAAAGATTCACCGCTGCTAATTGGCTCAAGGCTGAAAACACATCCGCAGCCACCTGGTTGAAGGCTCTTCATGTTCCTAACTACCTTAACTTCAAAGTTAGATCTTAA 1764 0.432 MSGKIIISVISLILVVGVAIGVVVTVHKKGEDPEIQTHHRFLRVICQNAEDQKLCHETLSSIRGADASDPKTYIAAAVKAATDNVIKAFNMSDRLIVEYGDKDRHTKMVLAGCKEMMEFALDSLDLSTTVVRDKNILSVHAQHADLRNWLSAVISYKQACMEGFDDENEVEKKIKDQMHAQTIDRATKVTVVALDIVSDLSNILQEFGLKLDLKPASRRLLSEEIHNEQGFPAWVSATDRKLLAKMQGKGWRSKVKPNVVVAKDGTGQFKTIMDAINSYPKGNKGRYIIYVKAGVYDEQITVLKDCRNLLMYGDGPRKTIITGSKNEAKDKIDINHGASFGNDAERFIARDMTFENTAGPDGKQAVALRNLGDMSAFVGCEIKGYQDTLYAQSNRQFYSNCVISGTIDFIFGMSSTLIQDSKIIVRKPKSDQSNVITADGTVDSQYTNTGIVIQGCEIVTDEDLVKSQIRSYLGRPWKPYSRMVFMESTIGDFIHPDGWTPWIKDGIEINMDLCYIAEYANTGPSGNIGPGADVSKRIKWKGYRGLISRDEAERFTAANWLKAENTSAATWLKALHVPNYLNFKVRS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0414 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Tpr6g0414 587 PANTHER PECTINESTERASE 3 579 - -
Tpr6g0414 587 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Tpr6g0414 587 CDD PMEI-like_3 45 202 - -
Tpr6g0414 587 SUPERFAMILY Pectin lyase-like 255 564 IPR011050 -
Tpr6g0414 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 200 IPR035513 -
Tpr6g0414 587 Gene3D - 252 580 IPR012334 -
Tpr6g0414 587 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Tpr6g0414 587 PANTHER PECTINESTERASE 3 579 - -
Tpr6g0414 587 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 178 IPR006501 GO:0004857
Tpr6g0414 587 Pfam Pectinesterase 258 563 IPR000070 GO:0030599|GO:0042545
Tpr6g0414 587 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Tpr6g0414 587 SMART PMEI_2 37 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0414 Tpr-Chr6 3390987 3393173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0414 1 578 Carbohydrate Esterase AT2G47030 37.500 2.15e-117 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0414 K01051 - gmx:100781507 699.123