Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0413 ATGTCAGGAAAGATAATTATATCTGTTGTTTCGCTTATCCTTGTTGTAGGTGTTGCCATTGGTGTAGTTGTAGTTGTTCACAACAAAGGTGAAGATCCTGAGATCCAAACTCACCAAAGATCTCTTAGAGTTATTTGCCAAAATGCAGAAGACCAAAAACTATGCCATGAAACTCTTAGCTCTGTCCGTGGCGCCGATGCTTCAGATCCTAAGGCATACATAGCGGCTGCAGTGAAAGCAGCCACTGACAATGTCATTAAGGCATTTAACATGAGTGATAGACTCACTGTTGAGTACGGCGACAAAGATAGCGGCATCAAGATGGCTCTTGATGATTGCAAAGATTTGATGCAGTCTGCTTTAGACAGTCTTGATCTCTCCAACACATTGGTTCGTGATAACAACATTCAATCTGTTCATGCCCAAAATCCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATGAAAAAGAGGGTGAGAAGAAGATTAAGGATCAATTACAAACTCAGACTATAGACCGCGCGACAAAGATCACCGCTGTTGCTCTTGACGTTGTGACTGGTTTGTCCAACATACTCCAAGAATTCGGTTTGAAATTGGATCTCAAACCCGCTTCTCGTCGTCTTCTATCTGAGGAAATCGATAACGAGCAAGGATTCCCTGCATGGGTCTCTGCTACCGATCGCAAGCTTTTGGCTCAAATGCAAGGAAAAGGATGGAGATCAAAAGTTAAGCCTAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATTTAAAACAATTATGGATGCTATTAATTCTTACCCTAAAGGAAACAAAGGAAGATATATTATATACGTTAAGGCTGGTGTCTATGACGAGTACATCACTGTCCCCAAACAGTGCGTTAACTTGCTTATGTACGGTGATGGCCCTCAAAAGACCGTTATCACCGGTCATAAGAACTATGGCAAGGATGGTATCAAGACCATGCAAACCGCCACCTTTGCCAACACCGCAACTGGGTTCATCGCAAAGGCAATGACATTTGAGAACACTGCCGGTCCTGATGGTCATCAAGCTGTTGCTTTGAGAAACCAAGGAGATATGGCTGCTTTCGTTGGTTGCCATATCTTAGGTTACCAAGACACGTTGTACACTCAAACAAACAGGCAATTCTACCGCAATTGTGTCATCTCTGGTACCGTTGATTTCATCTTTGGAACATCTCCCACCTTGATCCAACACTCTGTGATCATCGTAAGGAAGCCTAACAACAACCAATTCAACACAATTACCGCAGACGGATCAGCGGATTCTAAGAGCATCAACACTGGTATTGTGATCCAGGACTGCCAAATCGTACCAGAGGCAGCATTGTTCCCCGTAAGGTTCCAAATCAAATCTTACTTGGGCAGACCATGGAAGGCATATGCAAGGACAGTCGTCATGGAATCCACCATCGGTGACTTTATTCATCCAGATGGATGGGCCCCTTGGTCAGGTGATCAATTTTTGAACACACTTTACTATGCAGAGTATGCCAACACTGGACCTGGTGCCAATATTGCCGGAAGAATCAAGTGGAAGGGTTATCACGGTGCCATTAGCCAGGCCGAAGCTACGAGATTCACCGCTGCTGAATGGCTCCAGGCTGGACCCAAGTCTGGAACCGACTGGTTGAAGGCTCTTCATGTTCCTCACTACCTTGGCTTCAAAGCTTGA 1737 0.4462 MSGKIIISVVSLILVVGVAIGVVVVVHNKGEDPEIQTHQRSLRVICQNAEDQKLCHETLSSVRGADASDPKAYIAAAVKAATDNVIKAFNMSDRLTVEYGDKDSGIKMALDDCKDLMQSALDSLDLSNTLVRDNNIQSVHAQNPDLRNWLSAVISYKQACMEGFDDEKEGEKKIKDQLQTQTIDRATKITAVALDVVTGLSNILQEFGLKLDLKPASRRLLSEEIDNEQGFPAWVSATDRKLLAQMQGKGWRSKVKPNVVVAKDGTGQFKTIMDAINSYPKGNKGRYIIYVKAGVYDEYITVPKQCVNLLMYGDGPQKTVITGHKNYGKDGIKTMQTATFANTATGFIAKAMTFENTAGPDGHQAVALRNQGDMAAFVGCHILGYQDTLYTQTNRQFYRNCVISGTVDFIFGTSPTLIQHSVIIVRKPNNNQFNTITADGSADSKSINTGIVIQDCQIVPEAALFPVRFQIKSYLGRPWKAYARTVVMESTIGDFIHPDGWAPWSGDQFLNTLYYAEYANTGPGANIAGRIKWKGYHGAISQAEATRFTAAEWLQAGPKSGTDWLKALHVPHYLGFKA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0413 578 SUPERFAMILY Pectin lyase-like 255 570 IPR011050 -
Tpr6g0413 578 Gene3D - 252 576 IPR012334 -
Tpr6g0413 578 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Tpr6g0413 578 SMART PMEI_2 37 196 IPR006501 GO:0004857
Tpr6g0413 578 PANTHER PECTINESTERASE 3 576 - -
Tpr6g0413 578 CDD PMEI-like_3 45 202 - -
Tpr6g0413 578 Pfam Pectinesterase 258 555 IPR000070 GO:0030599|GO:0042545
Tpr6g0413 578 PANTHER PECTINESTERASE 3 576 - -
Tpr6g0413 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Tpr6g0413 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 22 194 IPR006501 GO:0004857
Tpr6g0413 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 198 IPR035513 -
Tpr6g0413 578 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Tpr6g0413 578 Pfam Plant invertase/pectin methylesterase inhibitor 43 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0413 Tpr-Chr6 3386979 3389203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0413 1 576 Carbohydrate Esterase AT2G47030 39.280 8.35e-138 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0413 K01051 - gmx:100815015 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0413 6 3386979 3389203 Tpr1g2303 1 25892965 25896568 PCT
Tpr1g2304 1 25901828 25903841 Tpr6g0413 6 3386979 3389203 PCT