Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0412 ATGTCAGGAAAGATAATTGTATCAGTTGTTTCGCTTATCCTTGTTGTAGGTGTTGCCATCGGTGTTGTTGTCGCTGTTCACAAGAAAGGTGAAGATCCTGAGATTCAAACTCAACAAAGATCTCTTAGAGTTATTTGCCAAAATGCAGAAGACCAAAAACTATGCCATGAAACTCTTAGCTCTGTCAGTGGCGCCAACGCTTCAGATCCTAAGGCATACATAGCGGCTGCAGTGAAAGCAGCCACTGACAATGTCATTAAGGCATTTAACATGAGTGATAGACTCACTGTTGAGTATGGCGACAAGGATAGCGGCATCAAGATGGCTCTTGATGATTGCAAAGACTTGATGCAGTCTGCTTTAGACAGTCTTGATCTCTCCAACACATTGGTTCGTGACAACGACATTCAATCTGTTCATGCCCAAAATCCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATGAAAAAGAGGGTGAGAAGAAGATTAAGGATCAATTACAATCTCAGACTATAGACCGCGCGACAAAGATCACCGCTGTTGCACTTGACGTTGTGGCTGGTTTGTCCAACATACTCCAAGAATTCGGTTTGAAATTGGATCTCAAACCCGCTTCTCGTCGTCTTCTATCTGAGGAAATCCATAACGAGCAAGGATTCCCTGCATGGGTCTCTGCTACCGATCGCAAGCTTTTGGCTCAAATGCAAGGAAAAGGATGGAGATCAAAAGTTAAGCCTAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATTTAAAACAATTATGGATGCCATTAACTCTTACCCTAAGGGAAACAAAGGAAGATATATTATCTACGTTAAGGCTGGTATCTATGACGAGTACATCACTGTCCCCAAACAGTGCGTTAACTTGCTTATGTACGGTGATGGCCCTCAAAAGACCGTTATCACCGGTCATAAGAACTATGGCAAGGATGGTATCAAGACCATGCAAACCGCCACCTTTGCCAACACCGCAACTGGGTTCATTGCAAAGGCAATGACATTTGAGAACACTGCCGGTCCTGATGGTCATCAAGCTGTTGCTTTGAGAAACCAAGGAGATATGGCTGCTTTCGTTGGTTGCCATATCTTAGGTTACCAAGACACCTTGTACACTCAAACCAACAGGCAATTCTACCGCAACTGTGTCATCTCTGGTACCGTTGATTTCATCTTTGGAACATCTCCCACCTTGATCCAACACTCTGTGATCATCGTAAGGAAGCCTAACAACAACCAATTCAACACAATTACCGCAGACGGATCAGCGGATTCTAAGAGCATCAACACTGGTATTGTGATCCAGGACTGCCAAATCGTACCAGAGGCAGCATTGTTCCCCGTAAGGTTCCAAATCAAATCTTACTTGGGCAGACCATGGAAGGCATATGCAAGGACAGTCGTTATGGAATCCACCATCGGTGACTTTATTCATCCAGATGGATGGGCCCCTTGGTCAGGTGATCAGTTTTTGGACACACTTTACTATGCAGAGTATGCCAACACTGGACCTGGTGCCAATGTTGCCGGAAGAATCAAGTGGAAGGGTTATCACGGTGCCATTAGCCAGGCCGAAGCTACGAGATTCACCGCTGCTGAATGGCTCCAGGCTGGACCCAAGTCTGGAACCGATTGGTTGAAGGCTCTTCATGTTCCTCACTACCTTGGCTTCAAAGCTTGA 1737 0.4519 MSGKIIVSVVSLILVVGVAIGVVVAVHKKGEDPEIQTQQRSLRVICQNAEDQKLCHETLSSVSGANASDPKAYIAAAVKAATDNVIKAFNMSDRLTVEYGDKDSGIKMALDDCKDLMQSALDSLDLSNTLVRDNDIQSVHAQNPDLRNWLSAVISYKQACMEGFDDEKEGEKKIKDQLQSQTIDRATKITAVALDVVAGLSNILQEFGLKLDLKPASRRLLSEEIHNEQGFPAWVSATDRKLLAQMQGKGWRSKVKPNVVVAKDGTGQFKTIMDAINSYPKGNKGRYIIYVKAGIYDEYITVPKQCVNLLMYGDGPQKTVITGHKNYGKDGIKTMQTATFANTATGFIAKAMTFENTAGPDGHQAVALRNQGDMAAFVGCHILGYQDTLYTQTNRQFYRNCVISGTVDFIFGTSPTLIQHSVIIVRKPNNNQFNTITADGSADSKSINTGIVIQDCQIVPEAALFPVRFQIKSYLGRPWKAYARTVVMESTIGDFIHPDGWAPWSGDQFLDTLYYAEYANTGPGANVAGRIKWKGYHGAISQAEATRFTAAEWLQAGPKSGTDWLKALHVPHYLGFKA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0412 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Tpr6g0412 578 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Tpr6g0412 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 194 IPR006501 GO:0004857
Tpr6g0412 578 CDD PMEI-like_3 45 202 - -
Tpr6g0412 578 Pfam Plant invertase/pectin methylesterase inhibitor 43 195 IPR006501 GO:0004857
Tpr6g0412 578 Gene3D - 252 576 IPR012334 -
Tpr6g0412 578 SUPERFAMILY Pectin lyase-like 255 570 IPR011050 -
Tpr6g0412 578 Pfam Pectinesterase 258 555 IPR000070 GO:0030599|GO:0042545
Tpr6g0412 578 PANTHER PECTINESTERASE 3 576 - -
Tpr6g0412 578 PANTHER PECTINESTERASE 3 576 - -
Tpr6g0412 578 SMART PMEI_2 37 196 IPR006501 GO:0004857
Tpr6g0412 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 180 IPR035513 -
Tpr6g0412 578 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0412 Tpr-Chr6 3382825 3385098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0412 1 576 Carbohydrate Esterase AT2G47030 39.669 3.65e-139 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0412 K01051 - gmx:100781507 822.002