Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0409 ATGGAAAAAAACCAACCTTTTCTTCTAACCAACCGTCAAAATTTACCCTTTTCTTCTTCAAAATCCTTCAACGATTTCACCACCTTACAACCACCACAACCACCACCACAATCATCATCATCATCATCAGAAATTCAATCCTGCAACAACATCACTCCACAACAACCATTTTCACCTCCCAAACAAAAAAAACTCAGCCGTTGCAAAACAGCACCAGCCATGTTCATTCTTTCAAACCTTAAACCAGAAAACAATCATCCTCAACTACCTAAACCACAAACAAATTCCATTATCCGACAAGGCATTTGGCTTCTCTTAATTTACCTTTCTGTCGGTGTCACTATTTACTCTTTCAACACAAAAAAATTCTCTGGCATAGAAACTCACCCTGTTGTTGATGCACTTTATTTTTGTATAGTTACTATGTGTACAATTGGTTATGGAGACATAGCTCCATTAACCCCTTTTACTAAACTTTTTGCTTGTGTTTTTGTTTTGGTTGGTTTTGGATTTATAGATATACTTTTAAGTGGACTTGTTAATTTTGTTTTGGATTTACAAGAAAACACGATTTTAACCGGGCTTAAAATGGGTGCTAGGGGAGGTTTTTCTGCTAGGGATTATATTGTTGATGTTGCAAAAGGTAGAATGAGGATTAGATTGAAGGTTGGTTTAGCACTTGGTGTTGTTGTTTTGTGTATTGGTGTTGGGAGTTTGGTTTTGTGTTTTGTTGAGGATTTGAATTGGGTTGATTCGATTTATTTGGCGGTTATGTCTGTTACAACGGTTGGTTATGGTGATCGAGCGTTTAAGACGCTTCCTGGGAGATTGTTTGCTGCAATTTGGTTGTTGTTTTCTACTTTGATGGTTGCTAGAGCTTTTCTTTATTTGGCTGAGGCTAGAATTGATAGAAGGCATAGGAGATTGGCTAAGATGGTTTTGCATAGAGAAATTACTATTGAAGATTGGCTTGCTGCTGATATCAACAATACCGGTTTTATTAGTAAGTCAGAATATGTGATCTTCAAGCTGAAAGAGATGGGAAAAATACAAGATAAAGATGTAATGGAAATTTGTAATCAATTTAGAAAGCTTGATCCTTCTAATTGTGGGAAGATAACATTACCTCATCTCTTGGAGGGTAGGTCATGA 1152 0.3655 MEKNQPFLLTNRQNLPFSSSKSFNDFTTLQPPQPPPQSSSSSSEIQSCNNITPQQPFSPPKQKKLSRCKTAPAMFILSNLKPENNHPQLPKPQTNSIIRQGIWLLLIYLSVGVTIYSFNTKKFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPFTKLFACVFVLVGFGFIDILLSGLVNFVLDLQENTILTGLKMGARGGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGVGSLVLCFVEDLNWVDSIYLAVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRLAKMVLHREITIEDWLAADINNTGFISKSEYVIFKLKEMGKIQDKDVMEICNQFRKLDPSNCGKITLPHLLEGRS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0409 383 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 55 378 - -
Tpr6g0409 383 PRINTS Two pore domain K+ channel signature 140 168 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tpr6g0409 383 PRINTS Two pore domain K+ channel signature 261 270 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tpr6g0409 383 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 55 378 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tpr6g0409 383 MobiDBLite consensus disorder prediction 1 63 - -
Tpr6g0409 383 Pfam Ion channel 230 299 IPR013099 -
Tpr6g0409 383 Pfam Ion channel 104 183 IPR013099 -
Tpr6g0409 383 SUPERFAMILY EF-hand 323 378 IPR011992 -
Tpr6g0409 383 Gene3D - 84 193 - -
Tpr6g0409 383 Gene3D - 208 325 - -
Tpr6g0409 383 SUPERFAMILY Voltage-gated potassium channels 97 183 - -
Tpr6g0409 383 SUPERFAMILY Voltage-gated potassium channels 213 321 - -
Tpr6g0409 383 MobiDBLite consensus disorder prediction 1 28 - -
Tpr6g0409 383 MobiDBLite consensus disorder prediction 39 61 - -
Tpr6g0409 383 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0409 Tpr-Chr6 3370600 3373447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0409 33 379 Ion Channels AT4G01840 63.739 9.11e-158 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0409 K05389 - gmx:100801488 558.91