Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0401 ATGGGAAAAACCAAAAGTTCAAATTCTACTTCATCTATTAGCAGCAACACAAACCACAATCTTTTTATTTCAACTGCATCCTCTCTCAACTCACAACAACTTCCCACAGATCTTAGTCTTGGACTCACCATTTCCTCCACTCAACATTTTCGTGTTGGCTCCTCTGTTTCAAGGGGGCAATGGCATCAAAACTATGATTACAATGATCATAGTAGTTTCTTTGTGAAAGTGTATATGGAAGGCATTCCAATTGGTAGAAAACTCAATATACTTGCTCATCAAAGTTACCATGAGTTAGTAAAAACTCTTGAACACATGTTTGACACTACCATTCTATGGGGAAATGAGATGGATGAAGTGCAACCAGAGAGATGTCATGTGTTAACTTATGAAGATGAAGAAGGAGATTTGGTCATGGTTGGTGATGTTCCTTGGGAGATGTTTTTATCTACCGTTAAGAGGTTGAAGATCACAAGAGTAGACACCTTTCGGTGTTAG 498 0.3835 MGKTKSSNSTSSISSNTNHNLFISTASSLNSQQLPTDLSLGLTISSTQHFRVGSSVSRGQWHQNYDYNDHSSFFVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMFDTTILWGNEMDEVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFRC* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0401 165 ProSiteProfiles PB1 domain profile. 72 162 IPR000270 GO:0005515
Tpr6g0401 165 PANTHER AUXIN-INDUCED PROTEIN 8 163 - -
Tpr6g0401 165 SUPERFAMILY CAD & PB1 domains 63 157 - -
Tpr6g0401 165 Pfam AUX/IAA family 68 159 IPR033389 -
Tpr6g0401 165 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 163 IPR003311 GO:0005634|GO:0006355
Tpr6g0401 165 Gene3D - 66 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0401 Tpr-Chr6 3297658 3298718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0401 76 157 B3 DNA Binding Superfamily AT4G23980 35.366 1.24e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr6g0401 AUX_IAA 2e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0401 K14484 - gmx:100818376 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0401 6 3297658 3298718 Tpr1g2312 1 25974423 25975736 PCT