Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0400 ATGTTTGATTCTAGTTCCTCTCATATTGATTTTCAATCTTCCCAAAGTAAGAATAGTACTCACATGTTCACATATTTAACACCATTAAAGAAACCAAGAATGGAAATTTCAAGCCAAAAAGAAACAACAAAGTTAGAGAAACAATGCTTGGTGGGGTGTGAATATCAAAAAACAGGAAAAGTGAATTTCTCAAACTTTTCTATACCTGCAGTGTTTCTCAAATCAACTCATCAACAAAATAGTTCAAGAAATGTTGCTTCAACAAAATTTCAAGAACAAACTGCTGCTAACAAATCAAGAATGGAATTACTACCAACAGTTGATGAACATTCTGAAGCTGCTAGCCATAACAGTGCCTTTGATATTAGACAAAAGAGAAAAGCTAGTGCTATTGATCTATGTAATGAAAGAGAATCTTCTTCTGTATGCTCACTTGAAGCCTCAAATGATCTAAACTACGGTCTCGGAAAATTACATGAGGAAACCGATGACTCGCCTTATTTCAGTGATAATGAAGATGAAAAATCAGAAAATATGATAAAAGAAAAGGTAGCTCGCGAAGGAAACAGAATCAAGAAAAGCTACAGGAATGCTAAAGTTCATAATTTATCAGAAAGGAAGAGAAGAGATAAAATCAACGAAAAAATACGTACATTGAGAGAGCTCATACCGAATTGCAATAAGACGGACAAAGCTTCAATGCTTGACGATGCCATTGAATATCTTAAGAACCTCAAACTTCAGTTACAGATTATGTCAATGAGTAGAGGACTTTGTATGCCATTTAATCATCTTATGATGTTACCAACACATCATATGAATTTGAATGCACAACATTTAATGGGATTGAGGCAACCACAAGTACAGTTTCCTATTCCACAACTGAGTAATGGTGGTGTCACTGAAAATAACAGCAGAGTTCAGATGTTTGGGTTCTCCAACCAATTTCAAGTAGCACCACCTATGTCAATTCCAAATGCACCTTTCATGCCTCATATTATTGGAAACTCTTCAACTACACCATCACCAACCTGTTATGGTGACATGCAGAATCAACCTGGCAGGACATGTGGTTAA 1077 0.3556 MFDSSSSHIDFQSSQSKNSTHMFTYLTPLKKPRMEISSQKETTKLEKQCLVGCEYQKTGKVNFSNFSIPAVFLKSTHQQNSSRNVASTKFQEQTAANKSRMELLPTVDEHSEAASHNSAFDIRQKRKASAIDLCNERESSSVCSLEASNDLNYGLGKLHEETDDSPYFSDNEDEKSENMIKEKVAREGNRIKKSYRNAKVHNLSERKRRDKINEKIRTLRELIPNCNKTDKASMLDDAIEYLKNLKLQLQIMSMSRGLCMPFNHLMMLPTHHMNLNAQHLMGLRQPQVQFPIPQLSNGGVTENNSRVQMFGFSNQFQVAPPMSIPNAPFMPHIIGNSSTTPSPTCYGDMQNQPGRTCG* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0400 358 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 94 344 - -
Tpr6g0400 358 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 100 - -
Tpr6g0400 358 SMART finulus 202 251 IPR011598 GO:0046983
Tpr6g0400 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 273 IPR036638 GO:0046983
Tpr6g0400 358 CDD bHLH_AtPIF_like 196 258 - -
Tpr6g0400 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Tpr6g0400 358 Pfam Helix-loop-helix DNA-binding domain 200 245 IPR011598 GO:0046983
Tpr6g0400 358 PANTHER TRANSCRIPTION FACTOR PIF3 94 344 IPR044273 GO:0003700|GO:0006355
Tpr6g0400 358 PANTHER TRANSCRIPTION FACTOR PIF3 2 100 IPR044273 GO:0003700|GO:0006355
Tpr6g0400 358 Gene3D - 192 254 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0400 Tpr-Chr6 3284482 3286671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0400 61 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.075 5.40e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g0400 HLH 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0400 K12126 - gmx:100784724 238.81