Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0396 ATGAGAATGAAGATGATTCTGATAATAACATTTTCTTTTCTTATCTCAGTCATTAGATCTGATGAGACTCACACAGATCATCTCTCTCCTCAGTATATATTGGAAAACGATGTGGTTTCACTTCCAGATGCAGCAGCTCCACAACCTCAACCTCTCATGGTTCCACTCACTCTTATTCATGGAGCTGATTCTAAAGGAGCAGTATGTTTGGATGGAACATTACCTGGTTACCACTTTCATCCCGGATCTGGATCGGGTGCAAATAGTTGGATCATTCAATTAGAGGGAGGAGGGTGGTGTAACACCATCAGAAGTTGTGTATTTAGGAAAACTACTCGCCGCGGTTCCTCAAATCACATGGAAAAGCAACTACCATTCACAGGGTTACTGAGCAATAAAGCTGAAGAAAATCCCGGTTTTTTCTTTTTACCCTTCACAGACATAACTCAGTACTTCAGGAGATTGAAAAAATGTTTACTCAACCTGTCTATTCTGTGTTGCCATCTTTTGTGCACAGATTTCTTTAACTGGAACAGAATCAAAGTGCGGTACTGCGATGGGGCATCTTTCAGTGGAGACAGTCAAAACGAGGCTGCAAAACTTCAATTTAGAGGACAAAAAATATGGCTAGCTGCAATGGAAGAATTATTGTCCAAGGGAATGAAGAACGCCAATCAGGCTCTTTTATCTGGATGCTCTGCGGGTGGTCTGGCATCTATACTACATTGTGACGAGTTCCGTACCTTGCTTCCAAAATCTACCAAAGTGAAGTGTTTAAGTGATGCGGGATTTTTTCTTGATGTAGCTGATGTCTCAGGCGGGCACACATTGAGGAATCTGTTTGGAGGTGTAGTTAAATTACAGGAAGTACAAAAAAATCTGCCAAAAAGTTGTCTCAACAACCTGGACCCAATTTCGTGCTTCTTTCCTCAAAATTTGATCAATCATGTTCAGACTCCACTGTTTCTGCTGAATGCAGCTTATGATGCATGGCAGCTGCAAGAAAGTTTAGCCCCGCCTTCAGCAGATCCTCACGGCTCTTGGAATAATTGTAAATCAAATCATGCAAATTGTGACTCATCCCAAATTCAGACCCTCCAAAATTTCAGAAACCAAATGCTAAATGACATGAAAGGTTTCTCAGCGACACCTCAATCTGGATTATTCATAAATTCTTGTTTTGCGCATTGCCAATCGGAGAGACAAGACACATGGTTTGCTGATGACTCTCCGCTCCTTAACAACATGCCAATTGCTATTGCCGTTGGAAATTGGTTTTTCGATCGTCAAGTTATCAAAGCTATTGACTGTGCTTACCCTTGTGACAATACCTGCCATAATCTGGTCTTCAACGTTGGTAGATCTTCCGTGGTGGACTCTCAGTCCACAAGTGATGATATTCCTACCAACTTGCTATATTCACGCTCAACAAAGTTGACGTTTAGTGCTGGCTTACTTGTACTAAGTGCTTTATTGCCAATTACATGCTCCTAA 1494 0.415 MRMKMILIITFSFLISVIRSDETHTDHLSPQYILENDVVSLPDAAAPQPQPLMVPLTLIHGADSKGAVCLDGTLPGYHFHPGSGSGANSWIIQLEGGGWCNTIRSCVFRKTTRRGSSNHMEKQLPFTGLLSNKAEENPGFFFLPFTDITQYFRRLKKCLLNLSILCCHLLCTDFFNWNRIKVRYCDGASFSGDSQNEAAKLQFRGQKIWLAAMEELLSKGMKNANQALLSGCSAGGLASILHCDEFRTLLPKSTKVKCLSDAGFFLDVADVSGGHTLRNLFGGVVKLQEVQKNLPKSCLNNLDPISCFFPQNLINHVQTPLFLLNAAYDAWQLQESLAPPSADPHGSWNNCKSNHANCDSSQIQTLQNFRNQMLNDMKGFSATPQSGLFINSCFAHCQSERQDTWFADDSPLLNNMPIAIAVGNWFFDRQVIKAIDCAYPCDNTCHNLVFNVGRSSVVDSQSTSDDIPTNLLYSRSTKLTFSAGLLVLSALLPITCS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0396 497 PANTHER NOTUM-RELATED 172 466 IPR004963 GO:0016787
Tpr6g0396 497 PANTHER NOTUM-RELATED 3 141 IPR004963 GO:0016787
Tpr6g0396 497 PANTHER PECTIN ACETYLESTERASE 172 466 - -
Tpr6g0396 497 PANTHER PECTIN ACETYLESTERASE 3 141 - -
Tpr6g0396 497 Pfam Pectinacetylesterase 173 430 IPR004963 GO:0016787
Tpr6g0396 497 Pfam Pectinacetylesterase 49 141 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0396 Tpr-Chr6 3237909 3246130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0396 49 463 Carbohydrate Esterase AT3G62060 65.144 0.0 570
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0396 6 3237909 3246130 Tpr1g2319 1 26063277 26072961 PCT