Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0395 ATGGCGTCTTCATTCTCAACCCAATTGCTTCAATCTCACAACCCTCTTTACCATCTCCAGGGCAATTTTAGCCAACATGTATCTATGGTTCCAAAGTCACATACCATATCACAGATTGGTTACACTAAATCATTTCCATTAAGATCAAATTTTTCTTTGAAGTTTTCAACCACGCAACAATCTGGAGCAAGATCAATTACATACAGGAGGAGAGTCACATGTGCTGCTGCTGCTGCTGAAAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGTTTCTTTGATGTAGAAATCGGGGGTAAACCTGTTGGCAGGATTGTTTTGGGTTTGTACGGAGAGGTTGCTCCTAAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATATGGTTACCAAGGATGCTCCTTCCATCGTATAATCAAAGACTTCATGCTTCAGGGAGGGGACTTCACTGAGGGAGATGGAACCGGCGGAGAAAGTATTTATGGTTCTAGTTTTGAAGATGAGACTTTTGCCTTGAAACATATTGGTCCTGGAGTTTTGAGTATGGCAAATGCTGGTCCTAATACTAATGGTAGTCAATTTTTTATTTGCACCGTAAAGACTCCATGGTTAGACGATCGACATGTTGTGTTTGGACATGTGATTGATGGAATGAATGTTGTGAGGACACTTGAATCTCAGGAAACAAGCAGATTGGATATCCCTAAAAAGCCTTGTAGAATTGTTAAGTCCGGAGAACTGCCTATAGATGGTTGA 771 0.4112 MASSFSTQLLQSHNPLYHLQGNFSQHVSMVPKSHTISQIGYTKSFPLRSNFSLKFSTTQQSGARSITYRRRVTCAAAAAENVQELQAKVTTKCFFDVEIGGKPVGRIVLGLYGEVAPKTVENFRALCTGEKGYGYQGCSFHRIIKDFMLQGGDFTEGDGTGGESIYGSSFEDETFALKHIGPGVLSMANAGPNTNGSQFFICTVKTPWLDDRHVVFGHVIDGMNVVRTLESQETSRLDIPKKPCRIVKSGELPIDG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0395 256 Gene3D - 76 255 IPR029000 -
Tpr6g0395 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 126 IPR002130 GO:0000413|GO:0003755
Tpr6g0395 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 152 IPR002130 GO:0000413|GO:0003755
Tpr6g0395 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
Tpr6g0395 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 198 210 IPR002130 GO:0000413|GO:0003755
Tpr6g0395 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 211 226 IPR002130 GO:0000413|GO:0003755
Tpr6g0395 256 CDD cyclophilin_ABH_like 92 250 - -
Tpr6g0395 256 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 135 152 IPR020892 GO:0003755|GO:0006457
Tpr6g0395 256 SUPERFAMILY Cyclophilin-like 88 252 IPR029000 -
Tpr6g0395 256 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 94 251 IPR002130 GO:0000413|GO:0003755
Tpr6g0395 256 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 46 255 - -
Tpr6g0395 256 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 46 255 - -
Tpr6g0395 256 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 95 249 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0395 Tpr-Chr6 3226827 3233400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0395 105 249 U-box Gene Family AT5G67530 44.521 2.45e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0395 K03768 - gmx:100785805 381.719