Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0394 ATGGAAAAATTCATTATTAGTTGTGTTCTTATATTGCTAATGAATCTACTTAGAGTGGAATCTGCTGTTTGGCAACAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGAAATCTGAACATAGATGGATATGGTATAAAAACAGCTGCATTGAGTACTGCTCTGTTTAATGATGGCAAGTCATGTGGTGGTTGCTATCAAATAGTTTGTGATGCAAGGAAAGTTCCTCAATGGTGCCACAAGGGAACTTCCATTACTATTACTGCCACAAACTTTTGTCCACCAAACTTTGCACAACCTAGTGACAATGGTGGTTGGTGTAATCCTCCAAGACCACACTTTGACATGTCTCAACCTGCCTTTGAAACTATAGCTATTTACAGAGCTGGAATTGTTCCCATTTTGTACAGGAGAGTTGGGTGCAAAAGAAGTGGAAACATAAGATTTACTATAAATGGGAGAGATTATTTTGAGCTAGTTCTTATAAGCAATGTAGGTGGAGGTGGAGAGATATCTAAAGTATGGATCAGAGGGTCAAAAAAGAATAAATGGGAATCAATGTCAATGAATTGGGGTGCTAATTGGCAGAGCCTAAGCTTTCTCAATGGTCAAAGCTTATCCTTTAGAATTCAACTCAAAAATGGAAAGACTCGTACAGCTATAAATGTAGCACCATCCAATTGGAAATTTGGCCAATCTTTCAAAAGTAATGTTCAATTCTAA 756 0.3836 MEKFIISCVLILLMNLLRVESAVWQQAHATFYGGSDASGTMGGACGYGNLNIDGYGIKTAALSTALFNDGKSCGGCYQIVCDARKVPQWCHKGTSITITATNFCPPNFAQPSDNGGWCNPPRPHFDMSQPAFETIAIYRAGIVPILYRRVGCKRSGNIRFTINGRDYFELVLISNVGGGGEISKVWIRGSKKNKWESMSMNWGANWQSLSFLNGQSLSFRIQLKNGKTRTAINVAPSNWKFGQSFKSNVQF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0394 251 PANTHER EXPANSIN 9 251 - -
Tpr6g0394 251 Pfam Lytic transglycolase 59 147 IPR009009 -
Tpr6g0394 251 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Tpr6g0394 251 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Tpr6g0394 251 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Tpr6g0394 251 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Tpr6g0394 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Tpr6g0394 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Tpr6g0394 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 157 IPR007112 -
Tpr6g0394 251 Pfam Expansin C-terminal domain 158 236 IPR007117 -
Tpr6g0394 251 SMART dpbb_1 59 147 IPR007112 -
Tpr6g0394 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 247 IPR007117 -
Tpr6g0394 251 SUPERFAMILY Barwin-like endoglucanases 13 175 IPR036908 -
Tpr6g0394 251 SUPERFAMILY PHL pollen allergen 154 247 IPR036749 -
Tpr6g0394 251 Gene3D - 14 153 IPR036908 -
Tpr6g0394 251 PANTHER EXPANSIN-A15 9 251 IPR002963 GO:0009664
Tpr6g0394 251 Gene3D - 154 251 IPR036749 -
Tpr6g0394 251 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Tpr6g0394 251 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Tpr6g0394 251 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Tpr6g0394 251 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Tpr6g0394 251 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Tpr6g0394 251 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Tpr6g0394 251 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Tpr6g0394 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Tpr6g0394 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0394 Tpr-Chr6 3222948 3224613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0394 5 251 Expansin Gene Family AT4G01630 75.904 4.61e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0394 - - gmx:100787396 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0394 6 3222948 3224613 Tpr1g2329 1 26140974 26142451 PCT