Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0389 ATGTCTGAGCGAATTTTCAATGAAAATAATGATCATTCACCCCAGAATGCGGCTGATGAACCCTTACCTGAGCAAGAAGTGAAAGAATTTCTTTGTCGTTACTGTGACAGGAAGTTCTCCACTCCTCGGTCACTTGGAGGACACCAAAATGCTCATAAGTGTGAGCGTCTCGTCGAAAAAATGGAAGAAGAAAGGAGAAAGCTGGAGAAAATGAATTCGACCATAGGGATTACACATAGTAATCAACCATACCCTTATCCATTTTCAAGCCACATTCACGATCATGGGTATTCATATTTATGTGGTGCTAACTTGCACATGAACAATACAATGCCTTCTTGGGCTAATACTTTGGGATTTGGGCTTTTGTCTCAAGCTAATCAAACCTCTTCAATTGTTGTCTTGTACCGATCCAATTGGAGAAGACCCAATTCAAGAAAATTCTGA 447 0.4027 MSERIFNENNDHSPQNAADEPLPEQEVKEFLCRYCDRKFSTPRSLGGHQNAHKCERLVEKMEEERRKLEKMNSTIGITHSNQPYPYPFSSHIHDHGYSYLCGANLHMNNTMPSWANTLGFGLLSQANQTSSIVVLYRSNWRRPNSRKF* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0389 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Tpr6g0389 148 Gene3D Classic Zinc Finger 13 82 - -
Tpr6g0389 148 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Tpr6g0389 148 Coils Coil 51 74 - -
Tpr6g0389 148 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 141 IPR044246 GO:0009788
Tpr6g0389 148 MobiDBLite consensus disorder prediction 1 23 - -
Tpr6g0389 148 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0389 Tpr-Chr6 3193089 3193535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0389 25 97 C2H2 Transcription Factor Family AT5G57520 39.726 2.20e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g0389 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0389 - - cam:101490368 82.0333