Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0383 ATGGCTTCCATCACTGTAATCGGCGCTTCCTCTGCATACAAACATCCCTCTCTCGAACCACACAAGAAAAAACTATCATCCATTTCCACTTCCTCAGTTAAATTCCACTCTCTCGACTCCAACAAATCCCGCCACGTCACCAACACTCTCCTCAGACATAACAACCGTCTCGCCAATTTCAACTCCTCCTCCTCCTCCGATAGGTTTATTCCTTCTGCTGTTGCTACTCCAAATTCTTCCTCTTCTTCACTTCTCAGTGATGAAGCATTTCAAGGATTAGGAGGACCTAGAAGCTTCGACGGTGATGATGAAGAAGATGATGATTTCCCTTCACGAACTGCTTCTATTAGCTCCGATGAACTTGACATTTCTAAACTCGATTTGCCTTCGCAACTTGTGGATTCACTTCGTAAACGTGGGATTACTGAGCTTTTTCCTATTCAGAGAGCTGTGTTAGTTCCTGCACTACAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACAGGGAAAACATTGGCTTTTGGAATTCCTATTATTAATGGTCTCGATGATGGTGAAGATTCGGGTCCTTACAGCAGTAGCAGGCGTCTTCCTAGAGCCTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCGCCTTATCTCAAAACAGTTTGTGTTTATGGAGGTGTTTCTTATGTTACTCAACAGAGTGCACTTTCACGTGGTGTTGATGTGGTTGTTGGAACTCCCGGCAGGCTGATTGACCTCATCAATGGGAACACACTTAGGTTGAATGAAGTTGAGTATTTGGTACTCGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAAGTCATTTTGGAAAAGCTTCCACCTAAGAGACAAAGCATGCTTTTTTCTGCAACCATGCCTACTTGGGTCAAAAAATTGGCCAGGAAATATTTGAACAATCCATTGACTATTGATTTGGTTGGCGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTTTGTCAGCCACTGCCACTTCAAAGCGAACAATTCTTTCTGATCTTATTACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCGTTGGCATTAACAAATAGTATCACATCTGAGGCACTGCATGGCGATATATCTCAGCACCAGAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAATTTACAGTGCTTGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCAAATGATCCCGAGACTTTTGTACATCGTTCTGGTCGTACTGGCCGTGCAGGAAAGCTAGGTACAGCCATTCTGATGTACACGGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAAGATGTTTTGGAGGCATCCGCTGAGCAAGCTGTTGTCACACTTGATAGAGTTCATCCCGAGTCTATTGCATTTTTCACTCCAACTGCAGAGAAACTGATTGAAGAAAAAGGAACAACTGCCCTTGCAGCTGCACTGGCACAACTGAGCGGATTCGCCCAACCTCCGTCTTCCCGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAATTAACTCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGTAAGATCAGTCACCGGGTTTCTTAATGATGTATATTCCAAAGCGGCCGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACATTGGTAAAGAGTTACTTGAGAAGGATGTACCACCTGGAAACACCATTTCCAAAGTCACTAAGTTGCCTGCTTTGCAAGATGACGGGCCTGCAAGTGATTTCTATGGGAAGTTTTCCGATAGAGAACGAAGTAACCGCAGAGGTTCTAGAGATGGGAGAGGAGGTTTTAGATCCTCACGGGGATGGGATGGAGGCCGAGGCCAAGGCCGAGGCTCTGATGATGATTTTGGTGACTCTTCTAGGAGGGGTGGCAGAAGTTATAAAAGTGGCAACAGCTGGTCCAAACCAGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACAATCAAGCAGGTCTCCGTCATCACCGAACAGAAGCTTTGATGGGGCCTGTTTTAATTGTGGGGAATCCGGGCATCGAGCATCGGATTGTCCAACCAAGCGAGGCGGCGGCGGCTTTTATTAA 2322 0.447 MASITVIGASSAYKHPSLEPHKKKLSSISTSSVKFHSLDSNKSRHVTNTLLRHNNRLANFNSSSSSDRFIPSAVATPNSSSSSLLSDEAFQGLGGPRSFDGDDEEDDDFPSRTASISSDELDISKLDLPSQLVDSLRKRGITELFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDDGEDSGPYSSSRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLRLNEVEYLVLDEADQMLAVGFEEDVEVILEKLPPKRQSMLFSATMPTWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYALSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMYTGSQRRTVRSLERDVGCKFEFVNAPSMEDVLEASAEQAVVTLDRVHPESIAFFTPTAEKLIEEKGTTALAAALAQLSGFAQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSVRSVTGFLNDVYSKAADEVGKIHLIADERVQGAVFDLPEDIGKELLEKDVPPGNTISKVTKLPALQDDGPASDFYGKFSDRERSNRRGSRDGRGGFRSSRGWDGGRGQGRGSDDDFGDSSRRGGRSYKSGNSWSKPERSSRDDWLIGGRQSSRSPSSPNRSFDGACFNCGESGHRASDCPTKRGGGGFY* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0383 773 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 70 761 - -
Tpr6g0383 773 Pfam Zinc knuckle 749 764 IPR001878 GO:0003676|GO:0008270
Tpr6g0383 773 MobiDBLite consensus disorder prediction 658 681 - -
Tpr6g0383 773 Pfam Helicase conserved C-terminal domain 355 463 IPR001650 -
Tpr6g0383 773 ProSiteProfiles Zinc finger CCHC-type profile. 750 764 IPR001878 GO:0003676|GO:0008270
Tpr6g0383 773 SUPERFAMILY Retrovirus zinc finger-like domains 730 769 IPR036875 GO:0003676|GO:0008270
Tpr6g0383 773 SMART c2hcfinal6 749 765 IPR001878 GO:0003676|GO:0008270
Tpr6g0383 773 CDD DEADc 132 330 - -
Tpr6g0383 773 Gene3D - 740 771 - -
Tpr6g0383 773 MobiDBLite consensus disorder prediction 654 745 - -
Tpr6g0383 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 329 IPR014001 -
Tpr6g0383 773 SMART helicmild6 383 463 IPR001650 -
Tpr6g0383 773 Pfam DEAD/DEAH box helicase 145 318 IPR011545 GO:0003676|GO:0005524
Tpr6g0383 773 SMART ultradead3 140 346 IPR014001 -
Tpr6g0383 773 CDD GUCT_Hera 557 637 - -
Tpr6g0383 773 Gene3D - 347 548 IPR027417 -
Tpr6g0383 773 MobiDBLite consensus disorder prediction 729 745 - -
Tpr6g0383 773 Gene3D - 122 333 IPR027417 -
Tpr6g0383 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 504 IPR001650 -
Tpr6g0383 773 MobiDBLite consensus disorder prediction 691 706 - -
Tpr6g0383 773 PANTHER - 70 761 - -
Tpr6g0383 773 Pfam GUCT (NUC152) domain 550 650 IPR012562 GO:0003723|GO:0004386|GO:0005524
Tpr6g0383 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 484 IPR027417 -
Tpr6g0383 773 CDD SF2_C_DEAD 355 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0383 Tpr-Chr6 3138093 3144122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0383 96 485 Eukaryotic Initiation Factors Gene Family AT1G72730 35.750 1.34e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0383 - - gmx:100789516 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2337 1 26181213 26185876 Tpr6g0383 6 3138093 3144122 ECH
Tpr6g0383 6 3138093 3144122 Tpr6g0383 6 3138093 3144122 ECH
Tpr6g0383 6 3138093 3144122 Tpr1g2337 1 26181213 26185876 PCT