Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr6g0383 | ATGGCTTCCATCACTGTAATCGGCGCTTCCTCTGCATACAAACATCCCTCTCTCGAACCACACAAGAAAAAACTATCATCCATTTCCACTTCCTCAGTTAAATTCCACTCTCTCGACTCCAACAAATCCCGCCACGTCACCAACACTCTCCTCAGACATAACAACCGTCTCGCCAATTTCAACTCCTCCTCCTCCTCCGATAGGTTTATTCCTTCTGCTGTTGCTACTCCAAATTCTTCCTCTTCTTCACTTCTCAGTGATGAAGCATTTCAAGGATTAGGAGGACCTAGAAGCTTCGACGGTGATGATGAAGAAGATGATGATTTCCCTTCACGAACTGCTTCTATTAGCTCCGATGAACTTGACATTTCTAAACTCGATTTGCCTTCGCAACTTGTGGATTCACTTCGTAAACGTGGGATTACTGAGCTTTTTCCTATTCAGAGAGCTGTGTTAGTTCCTGCACTACAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACAGGGAAAACATTGGCTTTTGGAATTCCTATTATTAATGGTCTCGATGATGGTGAAGATTCGGGTCCTTACAGCAGTAGCAGGCGTCTTCCTAGAGCCTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCGCCTTATCTCAAAACAGTTTGTGTTTATGGAGGTGTTTCTTATGTTACTCAACAGAGTGCACTTTCACGTGGTGTTGATGTGGTTGTTGGAACTCCCGGCAGGCTGATTGACCTCATCAATGGGAACACACTTAGGTTGAATGAAGTTGAGTATTTGGTACTCGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAAGTCATTTTGGAAAAGCTTCCACCTAAGAGACAAAGCATGCTTTTTTCTGCAACCATGCCTACTTGGGTCAAAAAATTGGCCAGGAAATATTTGAACAATCCATTGACTATTGATTTGGTTGGCGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTTTGTCAGCCACTGCCACTTCAAAGCGAACAATTCTTTCTGATCTTATTACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCGTTGGCATTAACAAATAGTATCACATCTGAGGCACTGCATGGCGATATATCTCAGCACCAGAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAATTTACAGTGCTTGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCAAATGATCCCGAGACTTTTGTACATCGTTCTGGTCGTACTGGCCGTGCAGGAAAGCTAGGTACAGCCATTCTGATGTACACGGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAAGATGTTTTGGAGGCATCCGCTGAGCAAGCTGTTGTCACACTTGATAGAGTTCATCCCGAGTCTATTGCATTTTTCACTCCAACTGCAGAGAAACTGATTGAAGAAAAAGGAACAACTGCCCTTGCAGCTGCACTGGCACAACTGAGCGGATTCGCCCAACCTCCGTCTTCCCGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAATTAACTCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGTAAGATCAGTCACCGGGTTTCTTAATGATGTATATTCCAAAGCGGCCGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACATTGGTAAAGAGTTACTTGAGAAGGATGTACCACCTGGAAACACCATTTCCAAAGTCACTAAGTTGCCTGCTTTGCAAGATGACGGGCCTGCAAGTGATTTCTATGGGAAGTTTTCCGATAGAGAACGAAGTAACCGCAGAGGTTCTAGAGATGGGAGAGGAGGTTTTAGATCCTCACGGGGATGGGATGGAGGCCGAGGCCAAGGCCGAGGCTCTGATGATGATTTTGGTGACTCTTCTAGGAGGGGTGGCAGAAGTTATAAAAGTGGCAACAGCTGGTCCAAACCAGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACAATCAAGCAGGTCTCCGTCATCACCGAACAGAAGCTTTGATGGGGCCTGTTTTAATTGTGGGGAATCCGGGCATCGAGCATCGGATTGTCCAACCAAGCGAGGCGGCGGCGGCTTTTATTAA | 2322 | 0.447 | MASITVIGASSAYKHPSLEPHKKKLSSISTSSVKFHSLDSNKSRHVTNTLLRHNNRLANFNSSSSSDRFIPSAVATPNSSSSSLLSDEAFQGLGGPRSFDGDDEEDDDFPSRTASISSDELDISKLDLPSQLVDSLRKRGITELFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDDGEDSGPYSSSRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLRLNEVEYLVLDEADQMLAVGFEEDVEVILEKLPPKRQSMLFSATMPTWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYALSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMYTGSQRRTVRSLERDVGCKFEFVNAPSMEDVLEASAEQAVVTLDRVHPESIAFFTPTAEKLIEEKGTTALAAALAQLSGFAQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSVRSVTGFLNDVYSKAADEVGKIHLIADERVQGAVFDLPEDIGKELLEKDVPPGNTISKVTKLPALQDDGPASDFYGKFSDRERSNRRGSRDGRGGFRSSRGWDGGRGQGRGSDDDFGDSSRRGGRSYKSGNSWSKPERSSRDDWLIGGRQSSRSPSSPNRSFDGACFNCGESGHRASDCPTKRGGGGFY* | 774 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr6g0383 | 773 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 70 | 761 | - | - | |
Tpr6g0383 | 773 | Pfam | Zinc knuckle | 749 | 764 | IPR001878 | GO:0003676|GO:0008270 | |
Tpr6g0383 | 773 | MobiDBLite | consensus disorder prediction | 658 | 681 | - | - | |
Tpr6g0383 | 773 | Pfam | Helicase conserved C-terminal domain | 355 | 463 | IPR001650 | - | |
Tpr6g0383 | 773 | ProSiteProfiles | Zinc finger CCHC-type profile. | 750 | 764 | IPR001878 | GO:0003676|GO:0008270 | |
Tpr6g0383 | 773 | SUPERFAMILY | Retrovirus zinc finger-like domains | 730 | 769 | IPR036875 | GO:0003676|GO:0008270 | |
Tpr6g0383 | 773 | SMART | c2hcfinal6 | 749 | 765 | IPR001878 | GO:0003676|GO:0008270 | |
Tpr6g0383 | 773 | CDD | DEADc | 132 | 330 | - | - | |
Tpr6g0383 | 773 | Gene3D | - | 740 | 771 | - | - | |
Tpr6g0383 | 773 | MobiDBLite | consensus disorder prediction | 654 | 745 | - | - | |
Tpr6g0383 | 773 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 152 | 329 | IPR014001 | - | |
Tpr6g0383 | 773 | SMART | helicmild6 | 383 | 463 | IPR001650 | - | |
Tpr6g0383 | 773 | Pfam | DEAD/DEAH box helicase | 145 | 318 | IPR011545 | GO:0003676|GO:0005524 | |
Tpr6g0383 | 773 | SMART | ultradead3 | 140 | 346 | IPR014001 | - | |
Tpr6g0383 | 773 | CDD | GUCT_Hera | 557 | 637 | - | - | |
Tpr6g0383 | 773 | Gene3D | - | 347 | 548 | IPR027417 | - | |
Tpr6g0383 | 773 | MobiDBLite | consensus disorder prediction | 729 | 745 | - | - | |
Tpr6g0383 | 773 | Gene3D | - | 122 | 333 | IPR027417 | - | |
Tpr6g0383 | 773 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 358 | 504 | IPR001650 | - | |
Tpr6g0383 | 773 | MobiDBLite | consensus disorder prediction | 691 | 706 | - | - | |
Tpr6g0383 | 773 | PANTHER | - | 70 | 761 | - | - | |
Tpr6g0383 | 773 | Pfam | GUCT (NUC152) domain | 550 | 650 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Tpr6g0383 | 773 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 199 | 484 | IPR027417 | - | |
Tpr6g0383 | 773 | CDD | SF2_C_DEAD | 355 | 472 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr6g0383 | Tpr-Chr6 | 3138093 | 3144122 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr6g0383 | 96 | 485 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 35.750 | 1.34e-64 | 219 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr6g0383 | - | - | gmx:100789516 | 1027.7 |