Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0375 ATGGGAAGACATTCTTGTTGCTATAAGCAGAAGCTTCGTAAAGGTCTTTGGTCTCCTGAAGAAGATGAAAAGCTTTTGAATTATATCACCAAACATGGTCATGGATGTTGGAGTTCAGTTCCAAAACTAGCTGGTATATTATATGGTTTGCAAAGGTGTGGTAAGAGTTGTAGATTGAGATGGATAAATTATCTCAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAAGAAGAAAATTCCATAATTGAACTTCATGCACTCCTTGGCAACAGGTGGTCACAAATTGCGGCACAGTTACCGGGAAGAACAGACAATGAGATAAAAAATTTATGGAATTCAAGTTTGAAGAAGAAGCTTAGACAAAAAGGGATTGATCCAAACACACACCAACCACTGTGTGAATTAGCTGAGATCAATGACAAGGACAAGCAATTACCTGCAGATGACAAAAGCAATATTCTTAAGAAAACCTCTGTGGGATCCAATGAAGTTAAGAGTCTTTTTGATGATACACCAAATCCAAATTCTATTCCTATAGAAAACTGCAATTATCATCCACTTGAAAATTTTACTTCAACTTCAAAAATCAACAATTGCTTCATACCTTCTTCTGATATGGTTGGATTAGGAGGTTCATATCTCTCTTTTCAACAACTTAACTATGGAATCAATAACATAGCTTTATCTCCAAATTCCAACAACAACAATAACAATTCACTTTGTTTCATACCAAGTACTAGTGGTTCCAATTCAACTTGCTCTCAAATGATGTCTGAACTCAATTCTTCAACCATGTACCATTCTATGTTCCAAACAGCTCCAATCACAAAACATATAAATCCTTCAAATTCTATATCCTCTGGTGATGTTGATGGGATTCAAAACTGGGAATTCGGTAACAACAACGCGAGCAAAAGCAGCAATGGAAGCAGCTGTAGCAACATTAACTTCATTGATCATGAAGACATTAAATGGTCTGAATATCTAAACAGTACTACACCATTTTTTCAACAGCAACATCAAAGTTCAATCATCTACAATGATAATGAGGTTAAACAAGAAATGGGATTCATTAATAATAGAGATGAATCAAGTAGTACTACTATATGGAATAATAGTAATAGTCACCATCAGCAACATTTTGAAGGTGCTAATTCAGATATATATAGCAACAAAGATCTTCAGAGATTCTCATTGGCATTTGGACAAACACTTTAG 1221 0.3522 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGILYGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHALLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQKGIDPNTHQPLCELAEINDKDKQLPADDKSNILKKTSVGSNEVKSLFDDTPNPNSIPIENCNYHPLENFTSTSKINNCFIPSSDMVGLGGSYLSFQQLNYGINNIALSPNSNNNNNNSLCFIPSTSGSNSTCSQMMSELNSSTMYHSMFQTAPITKHINPSNSISSGDVDGIQNWEFGNNNASKSSNGSSCSNINFIDHEDIKWSEYLNSTTPFFQQQHQSSIIYNDNEVKQEMGFINNRDESSSTTIWNNSNSHHQQHFEGANSDIYSNKDLQRFSLAFGQTL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0375 406 CDD SANT 73 116 IPR001005 -
Tpr6g0375 406 CDD SANT 17 65 IPR001005 -
Tpr6g0375 406 Gene3D - 11 71 - -
Tpr6g0375 406 SMART sant 13 67 IPR001005 -
Tpr6g0375 406 SMART sant 70 118 IPR001005 -
Tpr6g0375 406 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Tpr6g0375 406 Pfam Myb-like DNA-binding domain 14 65 IPR001005 -
Tpr6g0375 406 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Tpr6g0375 406 Gene3D - 72 146 - -
Tpr6g0375 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Tpr6g0375 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tpr6g0375 406 PANTHER HOMEODOMAIN-RELATED 320 398 - -
Tpr6g0375 406 PANTHER HOMEODOMAIN-RELATED 1 316 - -
Tpr6g0375 406 SUPERFAMILY Homeodomain-like 12 112 IPR009057 -
Tpr6g0375 406 ProSiteProfiles Myb-like domain profile. 9 65 IPR001005 -
Tpr6g0375 406 PANTHER MYB DOMAIN PROTEIN 55 320 398 - -
Tpr6g0375 406 PANTHER MYB DOMAIN PROTEIN 55 1 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0375 Tpr-Chr6 3048848 3050654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0375 1 406 MYB Transcription Factor Family AT1G09540 44.828 2.98e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g0375 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0375 K09422 - gmx:778182 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2347 1 26315553 26317525 Tpr6g0375 6 3048848 3050654 ECH
Tpr1g2318 1 26039337 26041270 Tpr6g0375 6 3048848 3050654 ECH
Tpr6g0375 6 3048848 3050654 Tpr6g0375 6 3048848 3050654 ECH
Tpr6g0375 6 3048848 3050654 Tpr1g2347 1 26315553 26317525 PCT