Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0374 ATGATGCCACTGCATGAGTTATACAACATGTCTAAAGAGAAAGTTGATCATAAAGAGATGAACAATTCTTGTGCACATGATCAATCTTCTGTACCCAAAAATGATTTGTTTAAGCTGGTTTTGGAAAATGGTCAGATTTCAGTGCAGGGTCAATCTAGTTCCATTTCCAATAGAGGTAAAAAGAGTTCATCTTGTAAGAGTTTGCCATCTCATACTCTTAGGGGTCATGGTAAAGATATAGGACAACATGGTAATGAAACAAATACAAGGATGAAAAAGTTTGAGGATTTAGATAATGGTAATTTGAATGAAATTCTTACAAGGAATGTTTCTTCAAATCATGATGATGATTTGATGATGCCTTGGTTGAATTATGCAATGGATGAAAACTCTTTACAACATGACTATAATTATAGTTTCTTACATGAACTTTCTGGTGTCAACACAAATGATTTTCCTGCCTCAAATAAATTTTCTTTGCTTGATAGAGGAAGTAATTGTATTCAAGTATTTAGTGATTCTCATAAACAAGGGATTCTTTGCAAGGGTTCTTCAGTTGCAGCTGCAACTGAAGAATTTGAGACATTTGGACTAAAAAATAGCAACACTCAGTTATACACGGCGTCACGGTTGCATCAATGTCAACTTTCACTTGAAAATGATTCAAAAAGGAATGCAAACCAGCATGCACCTTGTGAAGAAATCTCTCGTATTCCATCTTCATCAACCATAATGAATTTCACCCATTTTGCAAAACCTGTTGCTACTGTGAAGGCTAATCTTCACAACATTGGATTGTCTTCATCGAGATCAGAAAATTTAGGAATAAAGAACAAAGATGAAGCTGCAATAGATATCAGTCCTTTTGAATCAACAAAAGTTCATTTAAGTGGAGATTGTCCAAGAAATTCTGCCATACACTATCAGCATAGTGTGGAGCCATCCAGGGTTGATTTGAAATCTTTGGAGCCGAGATCTCTTGAACAAAATGCCGGTGTTTCTACACCTGCTTGCAAAGAAGATGTGTTCAAGGTTGAGCAAACTTCTAATCAAGTTCTTGGTGAGAGTGGCAGAAAAGGTCAAGAAGCTGTTGAAAAATGTATGGAGCAAACAGTAGTAACTTCCTCTGTTTGCTCTGACAATGGCGCATATAGAGGTTCAGATGACACAAATAAAAATTTGAAGCGAAAAAATCTAGACTCCGAGGATTCTGAGTGGAATAGTGAAGATGTTGAGGATGAATCAATTGGTGTTAAAAGGACAGCTCATGGACGAGGAGGTATCGGCTCAAAGAGAAACCGTTCAGCTGAAGTGCACAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAGGATGCGTGCATTGCAAGAGCTCATACCGAATTGCAATAAGCAAATCATATTGGAATTTGTGAATACTAAAGCTCAACTTTTGTTTGGCGGGTTTCAACTTTCAATCCTCAACTTGAATATGAAAATCTTCCACTTTCATAACAAAAATAGCAGAGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACGCTTCAACTCCAACTGCAAATTATGTCAATGGGAGGTGGTGGCTTATACATGCCTATGATGTTACCTGCAGGAATGCAACACATGCATGCAGCACACATGTCTCCCTTTTCCCCGATGAATATTGGCATGCAGATGGGGTTGGGGGTGCCTCAATTTCAAGGAACTCACCTTCCTGTTGCGCATACATCTGGACTTGCTGCTTTACATGGGATGTCTAGACCAAATCATCAAATGTTTGGGAATAACCTCGGAACTCATCTACCAATGCCATGTGCTCCAATGTTTTCTTATCCTGGAGAGTCTGTTATGAACTCATCAGCTGTAGGATTAAATCCCAGTGGAACAGCAGGACTAATGGAAACTGTGGAGTTGGTTTCAACACCTAAGTTAATGGATCCAATGCCAAATGTGAGCTCACAAGTTATGCAAAACAACAATGGATGTAACTCAACAAATCAAGTTTCTATCCAGGGTAAGGGTGAAACAAGAACTGGTGGACTCGAACAATCAAATTTGATAATTGATAGTGGTCATGCCTTGTCGATAAATGACAAAGGAGCTGTTAATCCTCGTAAAGAAGACAACCTTGTGATTGATAAATCTCACGAGTAA 2169 0.3836 MMPLHELYNMSKEKVDHKEMNNSCAHDQSSVPKNDLFKLVLENGQISVQGQSSSISNRGKKSSSCKSLPSHTLRGHGKDIGQHGNETNTRMKKFEDLDNGNLNEILTRNVSSNHDDDLMMPWLNYAMDENSLQHDYNYSFLHELSGVNTNDFPASNKFSLLDRGSNCIQVFSDSHKQGILCKGSSVAAATEEFETFGLKNSNTQLYTASRLHQCQLSLENDSKRNANQHAPCEEISRIPSSSTIMNFTHFAKPVATVKANLHNIGLSSSRSENLGIKNKDEAAIDISPFESTKVHLSGDCPRNSAIHYQHSVEPSRVDLKSLEPRSLEQNAGVSTPACKEDVFKVEQTSNQVLGESGRKGQEAVEKCMEQTVVTSSVCSDNGAYRGSDDTNKNLKRKNLDSEDSEWNSEDVEDESIGVKRTAHGRGGIGSKRNRSAEVHNLSERRRRDRINERMRALQELIPNCNKQIILEFVNTKAQLLFGGFQLSILNLNMKIFHFHNKNSRDKASMLDEAIEYLKTLQLQLQIMSMGGGGLYMPMMLPAGMQHMHAAHMSPFSPMNIGMQMGLGVPQFQGTHLPVAHTSGLAALHGMSRPNHQMFGNNLGTHLPMPCAPMFSYPGESVMNSSAVGLNPSGTAGLMETVELVSTPKLMDPMPNVSSQVMQNNNGCNSTNQVSIQGKGETRTGGLEQSNLIIDSGHALSINDKGAVNPRKEDNLVIDKSHE* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0374 722 Pfam Helix-loop-helix DNA-binding domain 438 521 IPR011598 GO:0046983
Tpr6g0374 722 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 434 520 IPR011598 GO:0046983
Tpr6g0374 722 MobiDBLite consensus disorder prediction 49 85 - -
Tpr6g0374 722 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 431 540 IPR036638 GO:0046983
Tpr6g0374 722 PANTHER TRANSCRIPTION FACTOR PIF3 500 674 IPR044273 GO:0003700|GO:0006355
Tpr6g0374 722 PANTHER TRANSCRIPTION FACTOR PIF3 2 466 IPR044273 GO:0003700|GO:0006355
Tpr6g0374 722 SMART finulus 440 526 IPR011598 GO:0046983
Tpr6g0374 722 MobiDBLite consensus disorder prediction 49 70 - -
Tpr6g0374 722 CDD bHLH_AtPIF_like 434 532 - -
Tpr6g0374 722 PANTHER TRANSCRIPTION FACTOR PIF3 2 466 - -
Tpr6g0374 722 PANTHER TRANSCRIPTION FACTOR PIF3 500 674 - -
Tpr6g0374 722 MobiDBLite consensus disorder prediction 395 444 - -
Tpr6g0374 722 MobiDBLite consensus disorder prediction 430 444 - -
Tpr6g0374 722 Gene3D - 429 528 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0374 Tpr-Chr6 3014121 3018169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0374 2 546 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 31.115 1.62e-44 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g0374 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0374 K12126 - gmx:100794974 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0374 6 3014121 3018169 Tpr6g0374 6 3014121 3018169 ECH