Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0370 ATGGATTATCGATGGACCAAAGGTAAGAATGAATCTGGTGGTCGTCACAGGAAGCAATTCAAAAAGGATCGGGTTTATGAAGAATCTCTTATTGATGATTTGTCTGATGATTTTCGCTTGCCGAGAAATCAAAGGCCAACTGAAAATGTTGATTTGGATAATGTTGAACAAGCTTCTCTAGATACACAAATAACTTCATCTAATATTGGTTTTAAGCTTCTTCAAAAGATGGGTTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAGGAATAGTGGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGGTTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGCGCAAAAAACTCGATATTGAGTTGGAGGAGACAGAAGAAAATGTCAGGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAGATCCGGAAGGTGTTTTATTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAGTTTGAAGCACACTTGAGCTCTTATGATCACAATCACCGGAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAATTGGCCAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGATCAACACCGGTTTCAGCTTCAGCTTCCTCCGAATCTAGGACTGCTACTGCACTAACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTCTCTGCTAAAGGCACTGCTTTCAAGAGTACGGTTGGTTCAAAGAAGCCAAATGTTTCAAAGAAGCCAAATGTTCCGGTGGCCTCTATATTTGGCAACGATAGCGATGAAGAGTAA 927 0.4196 MDYRWTKGKNESGGRHRKQFKKDRVYEESLIDDLSDDFRLPRNQRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGVGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAQKQQRLQLQQESGSTPVSASASSESRTATALTDQEQRNTLKFGFSAKGTAFKSTVGSKKPNVSKKPNVPVASIFGNDSDEE* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0370 308 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Tpr6g0370 308 MobiDBLite consensus disorder prediction 1 20 - -
Tpr6g0370 308 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Tpr6g0370 308 MobiDBLite consensus disorder prediction 192 222 - -
Tpr6g0370 308 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Tpr6g0370 308 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 308 - -
Tpr6g0370 308 MobiDBLite consensus disorder prediction 192 266 - -
Tpr6g0370 308 MobiDBLite consensus disorder prediction 227 266 - -
Tpr6g0370 308 MobiDBLite consensus disorder prediction 279 308 - -
Tpr6g0370 308 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Tpr6g0370 308 SMART G-patch_5 64 109 IPR000467 GO:0003676
Tpr6g0370 308 Coils Coil 116 143 - -
Tpr6g0370 308 SUPERFAMILY beta-beta-alpha zinc fingers 142 196 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0370 Tpr-Chr6 2964914 2968423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0370 1 308 C2H2 Transcription Factor Family AT5G26610 63.344 1.39e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0370 - - mtr:MTR_7g111520 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0370 6 2964914 2968423 Tpr6g0370 6 2964914 2968423 ECH