Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0330 ATGAACCGTTCCACTCATCGTTATTCATTTTGTTATAATAATAACTGCACTGAAACTTGGACTCTACGTAAGGTAATAATGTCTCTGCAACATGATACTCAGAGGAAGAAGGGGTATAAGAGTACCGGTCGTCGGAGAAGAGAGGACGTCATTTTCATTGTAAGGAAGAATAAACGGCAGGACTCTCTCTCGAAGAGACGAAAGCTGGTTCGTCAGGATATTTCTTCTCCGTTGATAGATGATTCTCCTCCGTCCACCATATATATCCCAAACCATGATGTTCTAGTGTCCCAGCTACAAACCATTCGGACAATGACACTGACATTATTGTCAGACAACCCCGCTGCACAACTTGAAGCAACTACTCAGTTTGGAACGCTATTATCAAAGGGATACATCCCTCTAATTGATAAGGTGATCCGGGCAGGTGTTGTCCCTCGGTTTGTGAAATTTTTGACAAGGGAAGATATGCCCCAACTGCAATTCATGGCAGCATGGACTCTGACCAACATCGCCGCGGGACTGTCTGAGCATACAAGAATTGTGATTGATCATGGTGCTGTTCCCTTGCTTGTGCAGCTTATGAGCTCTAGTAATGATGACATCAAAGAACAGACATTATGGGCATTAGGTAATATTGCTGGTGATTCCCCGAGTGCAAGTGATCATGTTCTTAATGATGGTGCACTTTTGCCATTATTGTCTCTATTGTGGAATCCTTCTACAACAAAAAAATCTATATGGAATATTGCTAAGTGGGCCTTTTTAAACTTGTGTCGTGGAAAGTCTCTTCCAACACTTTATGAACAGATACGGCCAGCATTGCCTGCCCTTCGGGAACTCTTATTGATGCATGATGAAGAATTTGTACTATATGCATGCCAGATTCTCTCCTGCATTACTCAAAATGGTTCAAGTGAAATGGTCCAAGCTGTCGTTGAAGCAAATGTTTGTCCACGACTTGTAGAGTTACTACTGTTTCCAACGTCAAAAGTTATTGTTCCTGCTCTGCAGATTCTAGGAGATATTGCTTCTGGTGATGATGCTCAGACTCAGGTTCTAATTAATAGTGGAGCTCTCCATTGTCTTAAGTTTCTTCTTACACAAAGTGATAAAATCATCCTCGAAGAAACTTGTTTGGCAATTTCCAATATCACAGCTGGGAATAGTGCTCAACTACAGGCCGTCCTTGATGCTGATCTCATTACTCCTCTTGTCTGTCTGACGAAGGCTGAATTCAACGTTAGGAATGAGGCTGTGTGGGCAATTTCCAATGCCACTCACGGAACTCCTGAGCAGATTCGGTCCTTGGCATGTAAAGGGTGCATCGAGGCACTCTGTGATCTCTTGATCAGTACAGACCCGAGTATTCTGACTGTTTGTCTAAATGGGCTGAGAAACATTTTAAAGGCAGGAGAAATTAACAAGCAAAAGGGACTATATAACAACGGGGTCAATATCTACGCTCAAATGGTAGAAGAGTGTGGAGGATTGGATAAGATTGTAAGTTTGCAAAGCTACGACAACAATGACATTTATAAAAAGGCTGTGGAGGTTTTGGAGAAATATTTTCCTGAGGACCTTGAAACGGTAGATGAAGAGAATCATCGTAGCAATGTGGATGGTACTTTGCAGCAGTAG 1641 0.4229 MNRSTHRYSFCYNNNCTETWTLRKVIMSLQHDTQRKKGYKSTGRRRREDVIFIVRKNKRQDSLSKRRKLVRQDISSPLIDDSPPSTIYIPNHDVLVSQLQTIRTMTLTLLSDNPAAQLEATTQFGTLLSKGYIPLIDKVIRAGVVPRFVKFLTREDMPQLQFMAAWTLTNIAAGLSEHTRIVIDHGAVPLLVQLMSSSNDDIKEQTLWALGNIAGDSPSASDHVLNDGALLPLLSLLWNPSTTKKSIWNIAKWAFLNLCRGKSLPTLYEQIRPALPALRELLLMHDEEFVLYACQILSCITQNGSSEMVQAVVEANVCPRLVELLLFPTSKVIVPALQILGDIASGDDAQTQVLINSGALHCLKFLLTQSDKIILEETCLAISNITAGNSAQLQAVLDADLITPLVCLTKAEFNVRNEAVWAISNATHGTPEQIRSLACKGCIEALCDLLISTDPSILTVCLNGLRNILKAGEINKQKGLYNNGVNIYAQMVEECGGLDKIVSLQSYDNNDIYKKAVEVLEKYFPEDLETVDEENHRSNVDGTLQQ* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0330 546 Gene3D - 102 525 IPR011989 -
Tpr6g0330 546 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Tpr6g0330 546 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Tpr6g0330 546 Pfam Armadillo/beta-catenin-like repeat 440 468 IPR000225 GO:0005515
Tpr6g0330 546 Pfam Atypical Arm repeat 486 534 IPR032413 -
Tpr6g0330 546 SUPERFAMILY ARM repeat 43 527 IPR016024 -
Tpr6g0330 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 214 IPR000225 GO:0005515
Tpr6g0330 546 PIRSF Importin_alpha 27 546 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tpr6g0330 546 PANTHER IMPORTIN ALPHA 33 534 - -
Tpr6g0330 546 SMART arm_5 175 215 IPR000225 GO:0005515
Tpr6g0330 546 SMART arm_5 132 173 IPR000225 GO:0005515
Tpr6g0330 546 SMART arm_5 430 470 IPR000225 GO:0005515
Tpr6g0330 546 SMART arm_5 347 387 IPR000225 GO:0005515
Tpr6g0330 546 SMART arm_5 389 428 IPR000225 GO:0005515
Tpr6g0330 546 SMART arm_5 305 345 IPR000225 GO:0005515
Tpr6g0330 546 SMART arm_5 217 260 IPR000225 GO:0005515
Tpr6g0330 546 SMART arm_5 262 302 IPR000225 GO:0005515
Tpr6g0330 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 143 186 IPR000225 GO:0005515
Tpr6g0330 546 PANTHER IMPORTIN SUBUNIT ALPHA-4 33 534 - -
Tpr6g0330 546 Pfam Importin beta binding domain 35 122 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0330 Tpr-Chr6 2674099 2679612 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0330 K15042 - cit:102577954 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1392 1 12728140 12733065 Tpr6g0330 6 2674099 2679612 ECH
Tpr4g1951 4 20303459 20304992 Tpr6g0330 6 2674099 2679612 ECH
Tpr5g2850 5 51699703 51703893 Tpr6g0330 6 2674099 2679612 ECH
Tpr6g0330 6 2674099 2679612 Tpr6g0330 6 2674099 2679612 ECH