Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0327 ATGTCGTATCGTCCTAATGCAAACGCGAGAACCGAGGTTCGTCGGAATCGATACAAAGTGGCGGTTGATGCCGAAGAAGGTCGTAGACGGCGAGAGGATAATTTGGTTGAGATCCGGAAGAATCGTAGGGAAGAAAGCTTGCAGAAGAAGAGGCGTGAGGGACTTCAAGCTCAACAGTTGCCTGAATCAGCTAATTCTACTCAAGTAGAGAAAAAGTTGGAACACTTACCAGCCTTGGTTACTGGTATTTGGACGGATGATAATAACATGCAGTTCGAGGCAACAACTCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGCCCTCCAATTGAGGAGGTTATACAAGCTGGTGTAGTTCCACGCTTTATTGAGTTCTTGATGAGGGAAGATTTTCCACAGCTTCAGTTTGAGGCTGCTTGGGCTTTAACAAATATAGCTTCTGGAACATCTGACAACACTAAGGTAGTGATTGATTCTGGTGCTGTTCCAATTTTTGTAAAGCTCCTTGCTTCTCCTAGTGACGATGTCCGTGAACAGGCCGTGTGGGCATTAGGAAATGTTGCTGGAGACTCTCCTAGATGCCGTGATCTTGTTCTTAGTCATGGAGCTTTGCTTCCTCTGTTGGCTCAACTGAATGAGCACGCCAAACTTTCTATGCTCAGAAACGCTACTTGGACGCTCTCAAACTTCTGCAGGGGAAAGCCACAACCTGCTTTTGATCAGGTTAAACCCGCGCTTCCTGCACTTGCCCAACTCATCCATTCAAATGACGAAGAAGTCTTGACCGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTGCAAATGACAAAATTCAAGGTGTAATTGATGCTGGTGTCTGTAGCCGGCTTGTTGAGCTTCTACTGCACCCATCTCCTTCCGTGCTTATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACAGGAGATGACTTGCAGACACAGGTCATCATCAACCATCGAGTTCTTCCTTGTCTTATGAGTCTCTTGACAAATAATTATAAAAAGAGCATCAAGAAGGAAGCATGTTGGACAATATCGAACATCACTGCTGGGAATAAACAACAGATTCAGGATGTGATTGATGCTAATATAATTGGTCCTTTGGTCCAATTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCTTGGGCCATTTCAAACGCTACATCGGGGGGATCTCATGAACAACTCAAGTACCTGGTAAGTCAGGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTCTTGAAGGGCTTGAAAACATCTTAAAGGTAGGCGAAGCTGATAAAAATATTGGCAACACTGGTGATGAGAATCTGTATGCCCAAATGATTGATGATGCTGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACCGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGACGATGAGGTTATGCCTCCAGGTGATGGTTCTCAACCAGGGTTCAACTTTGGTGGCTCTGAAGTTCCTGCCGTGCCTTCAGGATTTTTGGCTGGTCCCCCAGTAAAGTCCTCCAGTATGGCAGTTCAACAGTTTGGGGCGTCAAGTCTGTGTCGTTTCATTGTCCTTAGTTTCCGTAAGGTTCAGCCTTGGTAA 1692 0.4486 MSYRPNANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGLQAQQLPESANSTQVEKKLEHLPALVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSDNTKVVIDSGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQVKPALPALAQLIHSNDEEVLTDACWALSYLSDGANDKIQGVIDAGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQVIINHRVLPCLMSLLTNNYKKSIKKEACWTISNITAGNKQQIQDVIDANIIGPLVQLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDENLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDEVMPPGDGSQPGFNFGGSEVPAVPSGFLAGPPVKSSSMAVQQFGASSLCRFIVLSFRKVQPW* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0327 563 SUPERFAMILY ARM repeat 15 501 IPR016024 -
Tpr6g0327 563 Pfam Atypical Arm repeat 458 503 IPR032413 -
Tpr6g0327 563 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Tpr6g0327 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Tpr6g0327 563 SMART arm_5 403 443 IPR000225 GO:0005515
Tpr6g0327 563 SMART arm_5 106 147 IPR000225 GO:0005515
Tpr6g0327 563 SMART arm_5 317 358 IPR000225 GO:0005515
Tpr6g0327 563 SMART arm_5 190 232 IPR000225 GO:0005515
Tpr6g0327 563 SMART arm_5 149 189 IPR000225 GO:0005515
Tpr6g0327 563 SMART arm_5 360 400 IPR000225 GO:0005515
Tpr6g0327 563 SMART arm_5 234 273 IPR000225 GO:0005515
Tpr6g0327 563 SMART arm_5 275 315 IPR000225 GO:0005515
Tpr6g0327 563 MobiDBLite consensus disorder prediction 46 68 - -
Tpr6g0327 563 PIRSF Importin_alpha 5 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tpr6g0327 563 PANTHER IMPORTIN ALPHA 2 522 - -
Tpr6g0327 563 Gene3D - 74 497 IPR011989 -
Tpr6g0327 563 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Tpr6g0327 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Tpr6g0327 563 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Tpr6g0327 563 Pfam Armadillo/beta-catenin-like repeat 282 314 IPR000225 GO:0005515
Tpr6g0327 563 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Tpr6g0327 563 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Tpr6g0327 563 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Tpr6g0327 563 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Tpr6g0327 563 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Tpr6g0327 563 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Tpr6g0327 563 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Tpr6g0327 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 272 IPR000225 GO:0005515
Tpr6g0327 563 Gene3D - 13 52 IPR036975 GO:0006606
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0327 Tpr-Chr6 2661775 2666545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0327 132 392 U-box Gene Family AT3G46510 24.138 1.90e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0327 K15042 - gmx:100789135 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0327 6 2661775 2666545 Tpr1g1392 1 12728140 12733065 PCT