Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0326 ATGGGAATCATGGATCAAATGGAGAAGGAATGTTGTTCATATGATGAAATGGGTATGATCAAGAAGGCTTGTGCTGATTGCAAAGCCACCAAGACTCCACTTTGGAGAGGAGGACCAAATGGACCCAAGACGTTGTGCAACGCTTGTGGAATCAGGTACAGAAAGAGAAGGGGTTCTTGCAATAGTAAAGGACAAGAAAGGGAAAGGAAGAGAGAGAAAGCACAAAATGGGAGGAATCGTAGTAGTGATGATGATGGTGGTGGTGGCAGTGATGATGATTTGAATGAGTGTTTGAAAATGAAGTTAGTGGCTTTAGGTGAAGAGGTTTTATTGCATTCTGTTCTGAAGAAACAAAGGAGGATTAAATTAGGTGAAGAAGAACAAGCTGCTGTGTGTTTGATGGCACTCTCTTGTGGCTTTGTTTTTGCTTGA 432 0.419 MGIMDQMEKECCSYDEMGMIKKACADCKATKTPLWRGGPNGPKTLCNACGIRYRKRRGSCNSKGQERERKREKAQNGRNRSSDDDGGGGSDDDLNECLKMKLVALGEEVLLHSVLKKQRRIKLGEEEQAAVCLMALSCGFVFA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0326 143 Gene3D - 20 84 IPR013088 GO:0006355|GO:0008270
Tpr6g0326 143 SMART GATA_3 18 70 IPR000679 GO:0006355|GO:0043565
Tpr6g0326 143 ProSiteProfiles GATA-type zinc finger domain profile. 24 54 IPR000679 GO:0006355|GO:0043565
Tpr6g0326 143 MobiDBLite consensus disorder prediction 57 92 - -
Tpr6g0326 143 PANTHER OS01G0976800 PROTEIN 4 143 - -
Tpr6g0326 143 PANTHER GATA TRANSCRIPTION FACTOR 16 4 143 - -
Tpr6g0326 143 CDD ZnF_GATA 23 73 IPR000679 GO:0006355|GO:0043565
Tpr6g0326 143 MobiDBLite consensus disorder prediction 59 92 - -
Tpr6g0326 143 ProSitePatterns GATA-type zinc finger domain. 24 49 IPR000679 GO:0006355|GO:0043565
Tpr6g0326 143 Pfam GATA zinc finger 24 57 IPR000679 GO:0006355|GO:0043565
Tpr6g0326 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0326 Tpr-Chr6 2658770 2661620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0326 5 143 C2C2-Gata Transcription Factor Family AT5G49300 48.571 5.73e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr6g0326 GATA 2.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0326 - - lang:109330084 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1953 4 20323222 20324352 Tpr6g0326 6 2658770 2661620 ECH
Tpr6g0326 6 2658770 2661620 Tpr6g0326 6 2658770 2661620 ECH