Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0323 ATGGTTAAGGGAGGAAAAGTTAGTAGAAAGGGAAATTTGAGAAAAAAGGTTAGGTCAAAGTGGGATGGTGGTTCGGAGGATGATTCCGATGAGGATTATGTCGTTTCGGATGATGTTGGGAATGTATCTGATTGTCCGGAGGATGATTGTTTCTCTTTTGATGGGTTTATAGAAGATGAGGATGGGGAGGAGGAGGAGGAGGAGGAAATTCAACGAGTGACGAAATTTAATAGATCAAGGGCTAAAACTAAAACTGGCGTAAGGGGTCGGCAGGAAAATGCGAGTAAAACCTCGCGGAAGAGACAGAGGATTACATACGAAGAACAACCAGAAGAAGAGGAAGAAGAATGGGATGATAAAGAAGAGGAAGAAGAAGTAGAAGAAGATGATGATTACAATGATGTTTATGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGAAAGTAAAAGAAGAAGAGGAGGAGGAGGAGGAAGTAAAAGAAGAAGTGGAAGAGGTAGATGGAAATTATGTGGATGAGGATTTCAGTTATGATGATGACGAATTTATACCGGAGGAAGAAGATTACACAGATGAGGATGAAGAAGAAACAAGAGGCAGAAAGAAGAAAAAGGAGGATTTCGGTTATGAAGATGAAGAATTTATACCGACAGAAGAAGATTACACAGATGAGGAGGAGGAAGAAACAAGGGGCATAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCGACTTCTCGCAAAGGTCGAAAGAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGGCGAACGAATGGAGGATCAAAGAGGAAAATACAGTGTGATGATGTAGATGATTTTTCAGATAATGACCCAGCTATCAGAACAAATAGCAGAAAGAAACCAGTCCAGAAAAGGAGAAGGGTTCTCCTTGAAGATGCCAATTCCGGTTCAGATTGTGAGGCTAGACAATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCATGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGCAAAATGAAGTGGTTGGAGTACATGAAGATCTACACCAGCAACGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATGTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGACCTGAAAAGTGAGGTGGGAAAGCAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAACAGCTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGATGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGGTCAACAACCGCAGAAGAATCGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCCACTGAAGAAGAACTGAGGAGCTACATTGATCCATACGAGTCTGTTATGTGTTCAGAGTGCCATCTAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGCATGAAGTACCTGAAGGTAACTGGTACTGCGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCGCAAGCTCAAGAATCTGATTTAAGAGCGGCAACCCAAAGCCTTCCTTCCAGACCATCACCTGTTCATATACGAGAAAGTATCGACCTGAACTTGATATCTTCACCTCATACATCTTTTAGTCCAGGGTTCGGCCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTGCTGAAGGAGCTTCTCCAATGTCTGGAGGCGGGGCACCGACCTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAGCTACGTTCAATAGATAGAATGACTACTACAACTGGCAGAACTAACGGTGTTCCAGCTACCAATACAATAAGTAACTTGCATAGCTCTGAAATTGATCAAAGTAGGGAACCAAGTTCTCAACACACTAGGACACAGGGCGTAGGAACATCCTATCACACATTTTTTGAGGAGAGTTTAAGCAACAATATCTCTCCATTAATGCAGAATGGAGATCCCTTCTCCATAAGAATGAGCAATTCAAGAAGGCCAGTGGTTCAGGATTCAAACATCATGTTTTCGAATGGGCCTGTGAATGCTGGTATTTGGCCTGGAATTTTGGGGGCACACACCTTATCAGATAATGGACCAATCCACCCATGCAGCAGCAGATCAAACATTGACACCGAGGGTAGTATGCCCCTTACCATCAATGAAGAAGGTAATTTGCACATTGTAAAGGAGCGGTTGCAGTCAATGGTTAAAAGCCATCTGAAGAGATTGTCTCAAGATACTGATTTGGGTTATAGTACTTACAAGGACATTGCTAGAAGTTCGACGCATACCATACTCGCTGCTTGTGGACTCGAGCACAAGACGAGCGAGGTTTGTAATGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATAGCTGGTGGACAAACGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGTATTTGGGACACAAGAATGTCTTCACAGTGGTTAAGATTAGGACTTTAG 2688 0.4278 MVKGGKVSRKGNLRKKVRSKWDGGSEDDSDEDYVVSDDVGNVSDCPEDDCFSFDGFIEDEDGEEEEEEEIQRVTKFNRSRAKTKTGVRGRQENASKTSRKRQRITYEEQPEEEEEEWDDKEEEEEVEEDDDYNDVYEEEEEEEEEEEEEEKVKEEEEEEEEVKEEVEEVDGNYVDEDFSYDDDEFIPEEEDYTDEDEEETRGRKKKKEDFGYEDEEFIPTEEDYTDEEEEETRGIKKKNNGMKMGKKKALKKRVSATSRKGRKRSGSRVSKKPKRKRRRTNGGSKRKIQCDDVDDFSDNDPAIRTNSRKKPVQKRRRVLLEDANSGSDCEARQSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRMQNEVVGVHEDLHQQRKPPARKGKEKIEECQGRKGKEKVEDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPARSTTAEESVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGHEVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLPSRPSPVHIRESIDLNLISSPHTSFSPGFGHLSSSRFSGRSAEGASPMSGGGAPTLSERRWIHRQIQQLRSIDRMTTTTGRTNGVPATNTISNLHSSEIDQSREPSSQHTRTQGVGTSYHTFFEESLSNNISPLMQNGDPFSIRMSNSRRPVVQDSNIMFSNGPVNAGIWPGILGAHTLSDNGPIHPCSSRSNIDTEGSMPLTINEEGNLHIVKERLQSMVKSHLKRLSQDTDLGYSTYKDIARSSTHTILAACGLEHKTSEVCNVPPPSVCPHIELIAGGQTSMIKGCCSSCFDSFVGDVVKSIWDTRMSSQWLRLGL* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0323 895 SUPERFAMILY RING/U-box 418 467 - -
Tpr6g0323 895 MobiDBLite consensus disorder prediction 197 213 - -
Tpr6g0323 895 PANTHER F18C1.6 PROTEIN 118 883 - -
Tpr6g0323 895 MobiDBLite consensus disorder prediction 284 307 - -
Tpr6g0323 895 ProSiteProfiles Zinc finger PHD-type profile. 506 555 IPR019787 -
Tpr6g0323 895 MobiDBLite consensus disorder prediction 239 283 - -
Tpr6g0323 895 Pfam PHD-finger 509 554 IPR019787 -
Tpr6g0323 895 ProSitePatterns Zinc finger RING-type signature. 438 447 IPR017907 -
Tpr6g0323 895 CDD RING-HC_Topors 419 461 - -
Tpr6g0323 895 Pfam Ring finger domain 418 461 IPR001841 -
Tpr6g0323 895 SUPERFAMILY FYVE/PHD zinc finger 480 554 IPR011011 -
Tpr6g0323 895 Coils Coil 129 172 - -
Tpr6g0323 895 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 556 IPR013083 -
Tpr6g0323 895 PANTHER F18C1.6 PROTEIN 118 883 - -
Tpr6g0323 895 MobiDBLite consensus disorder prediction 85 108 - -
Tpr6g0323 895 MobiDBLite consensus disorder prediction 109 196 - -
Tpr6g0323 895 SMART PHD_3 508 553 IPR001965 -
Tpr6g0323 895 MobiDBLite consensus disorder prediction 1 315 - -
Tpr6g0323 895 MobiDBLite consensus disorder prediction 214 229 - -
Tpr6g0323 895 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 475 IPR013083 -
Tpr6g0323 895 SMART ring_2 419 460 IPR001841 -
Tpr6g0323 895 MobiDBLite consensus disorder prediction 51 68 - -
Tpr6g0323 895 ProSiteProfiles Zinc finger RING-type profile. 419 461 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0323 Tpr-Chr6 2625696 2629383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0323 419 464 C3H Transcription Factor Family AT2G39100 45.652 1.66e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr6g0323 PHD 4.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0323 - - mtr:MTR_7g112410 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0323 6 2625696 2629383 Tpr6g0323 6 2625696 2629383 ECH