Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0313 ATGGCCTTGTTTGTAAATTTCCTTTTCATCATTCTCATCCTTTTACCATCATTTGATAAGGTTCTCTCATTCCCAGATGAAATTCCCTCAGAAATTCAAACTCAAGACATGCAAGCTTTGATTGCACAAGCCTGCATGAATATTGAAAACCAAAACTCATGCCTCGCAAACATTCATAACGAGCTAACAAGAACTGGCCCTCCAAGCCCAACTTCTGTCATTAATGCTGCACTCAGAACCACGATCAATGAAGCCCTAGGTGCTATCAACAACATGACAAAGATCAGTACATTTTCTGTTAATAACCGCGAGCAACTTGCCATAGAAGATTGCAAGGAGCTCGTTGATTTCTCTGTGTCAGAGCTTGCATGGTCATTAGGGGAGATGAGGAGAATTCGAGCTGGCGACAGAACCGCGCAATATGAGGGAAACCTTGAAGCTTGGCTAAGTGCGGCGCTTAGCAACCAAGACACATGCATTGAAGGCTTTGAAGGTACTGATAGACGTCTCGAGAGTTATATTAGTGGAAGCTTAACACAAGTCACTCAGCTTATCAGCAATGTTCTGTCTTTGTACACTCAACTTCATAGCTTACCCTTTCGTCCTCGGAGGAACACTACTACCCTGCACGAAACACGTGCTAATGAAAGCTGGGAGTTTCCTGAATGGATGACCGAGGCTGATCAAGAGCTCCTTAAATCTAAATCACACGGTATGGTTGCAGACGCGGTCGTTGCATTGGATGGGAGTGGTCACTACCGTACAATCAACGAAGCTATTAATGCAGCTCCGAGTCATAGCAATAGGAGACATGTGATCTATGTGAAGAAAGGACTATATAAGGAGAATGTAGATATGAAGAAGAAGATGACCAACATCATGATCGTTGGTGATGGTATTGGCCAAACCATTGTCACAAGCAATCGCAATTTCATGCAAGGATGGACTACTTTTCGAACGGCGACGTTTGCTGTATCTGGGAAGGGTTTCATTGCGAGGGACATGACATTCCGGAACACAGCTGGACCAGTAAACCATCAAGCTGTGGCACTCCGTGTGGATTCAGACCAATCTGCATTCTTTAGGTGTAGCATAGAAGGACACCAAGACACGCTTTACGCACACTCGCTAAGGCAATTCTACCGTGAATGCGAAATATATGGTACCATAGACTTCATTTTTGGCAATGGAGCTGCTGTGCTACAAAATTGCAAGATATACACAAGAGTTCCACTTCCATTACAAAAGGTTACAATCACAGCTCAAGGTAGGAAAAGTCCACATCAAAGCACAGGGTTTACAATCCAAGATAGCTATGTTTTGGCTTCACAACCTACATATTTGGGAAGGCCATGGAAGGAATATTCTAGAACAGTTTACATTAACACATACATGAGCGGAATGGTTCAACCTCGAGGGTGGCTCGAGTGGCTCGGAAACTTTGCACTGGACACTTTGTGGTACGGCGAATACAGGAATTATGGACCTGGTGCATCACTTGTAGGCAGGGTTAAATGGCCTGGTTATCATGTCATTAAAGATGCTTCTACTGCCGGGTATTTTACGGTTCAGCGGTTCCTTAATGGCGGTTCATGGTTGCCTAAAACAGGTGTCAAGTTCACTGCAGGCTTGAGCAATTGA 1641 0.4424 MALFVNFLFIILILLPSFDKVLSFPDEIPSEIQTQDMQALIAQACMNIENQNSCLANIHNELTRTGPPSPTSVINAALRTTINEALGAINNMTKISTFSVNNREQLAIEDCKELVDFSVSELAWSLGEMRRIRAGDRTAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHSLPFRPRRNTTTLHETRANESWEFPEWMTEADQELLKSKSHGMVADAVVALDGSGHYRTINEAINAAPSHSNRRHVIYVKKGLYKENVDMKKKMTNIMIVGDGIGQTIVTSNRNFMQGWTTFRTATFAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFFRCSIEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLASQPTYLGRPWKEYSRTVYINTYMSGMVQPRGWLEWLGNFALDTLWYGEYRNYGPGASLVGRVKWPGYHVIKDASTAGYFTVQRFLNGGSWLPKTGVKFTAGLSN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0313 546 CDD PMEI-like_4 53 195 - -
Tpr6g0313 546 Pfam Pectinesterase 242 529 IPR000070 GO:0030599|GO:0042545
Tpr6g0313 546 Pfam Plant invertase/pectin methylesterase inhibitor 40 191 IPR006501 GO:0004857
Tpr6g0313 546 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 196 IPR006501 GO:0004857
Tpr6g0313 546 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Tpr6g0313 546 PANTHER PECTINESTERASE 10 544 - -
Tpr6g0313 546 Gene3D - 237 544 IPR012334 -
Tpr6g0313 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 196 IPR035513 -
Tpr6g0313 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 196 IPR035513 -
Tpr6g0313 546 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 10 544 - -
Tpr6g0313 546 SUPERFAMILY Pectin lyase-like 241 543 IPR011050 -
Tpr6g0313 546 SMART PMEI_2 36 191 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0313 Tpr-Chr6 2535751 2537925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0313 10 546 Carbohydrate Esterase AT3G05620 62.226 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0313 K01051 - gmx:100810565 940.643