Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0312 ATGGGAGATAATAAGAGAATAGCCATCATTGGCGTTTCTACCTTCTTATTAGTAGCTATGGTTGTTGCCGTTACAGTTAGTATCGGCAACAAAAATGAAACAGTAGACAATTCAAAAGATTCACATGTATCTTCATCAGTAAAAGCTGTTAAAACTCTCTGTGCACCAACAGAATACCAAAAAGAATGCGAGGATAGTCTGACACAAAATGCCGGAAACATAACCGATCCAAGAGAACTCATCAAAATCGCCTTCAACATAACCATCACAAAAATCGGTGAAGGACTTGAAAAAACTCAGCTCCTTCATGAAGTTGAAAATGATCCAAGAACCAAAGATGCACTTGACACATGTAAACAACTGATGCATCTTTCGACCGAAGAATTCAAAAGGTCGTTAGATAGGTTCAGTAACTTTGATCTTAATAGTCTTGACAGAGTCCTGACTAGTTTGAAAGTATGGTTAAGTGGTGCCATTACATACCAAGAAACTTGTTTGGATGCTTTTGAGAATACTACAACCGATGCTGGTCATAAAATGCAAGAGATTTTGCAAACCGCGATGCATATGAGTAGTAACGGTCTTGCCATCATTAACGAACTTTCCAAGACATTCGCAGACATGAAACAACCTGCAGGTCATCGTCGTCTTTTGAAGGAAAATGTTTATGAAGAAGTGGATGCTTTTGGTCATATTGGTAATTTTGAACTTCCTGATTGGGTTGAGGATCGTGCTGGTGTTAGGAAACTACTTAAAATGACTGGAAGAAAACTTTCAGCTCATGTTGTAGTTGCTAAGGATGGAACTGGAAATTTCACCTCAATCAATGAAGCTCTTAAAACTGTTCCCAAGAAAAACTTAAGGCCATATGTTATTTACATCAAGGAGGGTGTTTATAATGAATATGTTGAAGTTGAGAGAAACATGACTCATGTTGTTTTCATCGGTGATGGTGGTAGAAAATCGCGCATTACTGGCAACAAAAACTTTATTGATGGAGTTGGTACCTACAGAACCGCCACCGTTGCTATTCTTGGAGATTTCTTTGTTGGCATTGGTATCGGTTTTGAAAACTCTGCCGGAGCACACAAGCATCAAGCAGTTGCCTTGAGAGTCCAAGCTGACAGATCAATCTTCTACAAATGCAGAATGGATGGTTACCAAGATACACTTTACGCACACACCATGCGTCAATTCTATCGCGATTGTGTTATCACAGGTACCATTGATTTCGTCTTTGGTGATTCCGTTGCTGTTCTCCAAAACTGCACTTTCGTTGTCCGAAAGCCATTGGAAAATCAACAATGCATTGTGACTGCACAAGGTAGGAAGGAAAAAACTCAACCATCAGGATTAATCATCCAAGGAGGTTCAATTGTGTCAGATCCTAAATACTATCCAGTTAGGTTCGACAACAAAGCTTATCTCGCTCGTCCATGGAAGAATTTCTCAAGAACTATCTTCATGGATACATACATTGGTGATTTGATTACACCTGATGGTTATATGCCATGGCAAACACTAGAAGGTATCACAGGAACTGATACATGTTACTATGCTGAATACAATAACCGTGGTCCTGGTTCCGATGTTTCCAAGCGCGTTAAATGGGAAGGTGTTAAGACTATTACTTCACAAGGAGCAGCTGGTTTCCAACCAACAGCATTCTTCCATGGAGATGATTGGATTAGGGTTACAAGAGTTCCTTATTATCCAGGAGGTGCAGGAGCTTCTCATAAAACACCAACTCATTGA 1755 0.3977 MGDNKRIAIIGVSTFLLVAMVVAVTVSIGNKNETVDNSKDSHVSSSVKAVKTLCAPTEYQKECEDSLTQNAGNITDPRELIKIAFNITITKIGEGLEKTQLLHEVENDPRTKDALDTCKQLMHLSTEEFKRSLDRFSNFDLNSLDRVLTSLKVWLSGAITYQETCLDAFENTTTDAGHKMQEILQTAMHMSSNGLAIINELSKTFADMKQPAGHRRLLKENVYEEVDAFGHIGNFELPDWVEDRAGVRKLLKMTGRKLSAHVVVAKDGTGNFTSINEALKTVPKKNLRPYVIYIKEGVYNEYVEVERNMTHVVFIGDGGRKSRITGNKNFIDGVGTYRTATVAILGDFFVGIGIGFENSAGAHKHQAVALRVQADRSIFYKCRMDGYQDTLYAHTMRQFYRDCVITGTIDFVFGDSVAVLQNCTFVVRKPLENQQCIVTAQGRKEKTQPSGLIIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTLEGITGTDTCYYAEYNNRGPGSDVSKRVKWEGVKTITSQGAAGFQPTAFFHGDDWIRVTRVPYYPGGAGASHKTPTH* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0312 584 Gene3D - 255 574 IPR012334 -
Tpr6g0312 584 Pfam Plant invertase/pectin methylesterase inhibitor 49 197 IPR006501 GO:0004857
Tpr6g0312 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 202 IPR035513 -
Tpr6g0312 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 203 IPR035513 -
Tpr6g0312 584 CDD PMEI-like_3 52 203 - -
Tpr6g0312 584 PANTHER PECTINESTERASE 8 576 - -
Tpr6g0312 584 SMART PMEI_2 45 197 IPR006501 GO:0004857
Tpr6g0312 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 201 IPR006501 GO:0004857
Tpr6g0312 584 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Tpr6g0312 584 SUPERFAMILY Pectin lyase-like 259 572 IPR011050 -
Tpr6g0312 584 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Tpr6g0312 584 PANTHER PECTINESTERASE 8 576 - -
Tpr6g0312 584 Pfam Pectinesterase 261 560 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0312 Tpr-Chr6 2532161 2535022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0312 5 583 Carbohydrate Esterase AT3G05610 47.270 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0312 K01051 - gmx:100801686 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0312 6 2532161 2535022 Tpr1g1415 1 12958754 12961118 PCT