Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0305 ATGGGGATCGATCTAAAAGCTGGTGGTAAGAGCAAAAAAACTAAACGAACAGCACCAAAATCCAATGATATCTACCTCAAGCTACTCGTCAAGCTATATCGCTTTCTTGATCGAAGGACGGACAGCAATTTCAATTCTGTAATACTCAAGCGCTTGTTCATGAGCAAGGTCAACCGACCTCCAATTTCTTTATCAAGGGTGATCGAGTACTTGAAGGGGAAGGATGGTAAAATTGGTGTTGTCGTTGGTGCTGTAACTGATGATATCAGAGTATATGAAGTCCCAGCAATAAAAATAGCTGCACTCAGGTTTACAGAGACTGCACGTGCAAGAATAGAGAAAGCTGGTGGTGAATGCTTAACATTTGATCAACTTGCTCTTAGGGCTCCCCTTGGACAGAACACGGTTCTTCTAAGAGGCCCAAAGAATTCTCGTGAAGCAGTGAAACACTTTGGTCGTGCTCCTGGTGTGCCACACAGCCATACCAAGCCTTATGTAAGAGCGACGGGAAGGAAATTTGAGAAGGCTAGAGGAAAGAGGAACAGCAGAGGATTTAGGGTTTGA 564 0.4415 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLDRRTDSNFNSVILKRLFMSKVNRPPISLSRVIEYLKGKDGKIGVVVGAVTDDIRVYEVPAIKIAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGRAPGVPHSHTKPYVRATGRKFEKARGKRNSRGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0305 187 Gene3D - 1 187 - -
Tpr6g0305 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Tpr6g0305 187 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Tpr6g0305 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Tpr6g0305 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
Tpr6g0305 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0305 Tpr-Chr6 2481227 2483414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0305 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 74.731 1.14e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0305 K02883 - gmx:100499789 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0305 6 2481227 2483414 Tpr1g1417 1 12970759 12972632 PCT