Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr6g0300 | ATGAGTCGCCGATCAAGTCGAACAATATATGTTGGCAATCTTCCTGGTGATATTCGTGTGAGAGAAGTAGAGGATCTTTTCTACAAGTTTGGTCCTATTGTTGACATTGAATTGAAGGTTCCTCCAAGACCACCAGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCGTTATCGAGATGGATACAAGTTTGATGGCTTGCGATTAAGAGTTGAATTTGCACATGGTGGACGGGGCTATTCATCACCGGTAGACCGTTATAGTGGTAGCGGCAGTAGCCGTGGAGTGTCGAAGCATTCTGAGTATCGTGTTCTGGTCACTGGATTACCTTCTTCAGCTTCATGGCAAGACCTGAAAGATCACATGCGAAGAGCTGGTGATGTATGTTTCTCTCAAGTTTTCCGTGACCGGGGTGGCATGACTGGGATAGTGGATTATACAAATTATGATGATATGAAATATGCTATTAGAAAACTTGATGACTCAGAATTCCGAAATGCGTTCTCTCGGGCATACATACGAGTGAGGGAATATGATCGACGGAGCTATTCTAGGAGTCCTAGTTGTGATACAAGGAGGAGTTATTCTAGAAGCCTTAGCCGCAGTCCTAATATGTCACGAAGTAGAAGCCGCAGTCGAAGTTATAGCTATAGTAGCAGGAGCAGCAGAAGCTTGTCTCCAAAAGTGAAACGCACTCGGCGGTCTTTATCTCGTTCAAGATCATTGTCAAGATCGGAGTCAGCAAATTCATCTGTGAGATCTGAACGCAGCCAATCTGTCAACTCTGGAGACCGCTACTGA | 819 | 0.4469 | MSRRSSRTIYVGNLPGDIRVREVEDLFYKFGPIVDIELKVPPRPPGYAFVEFEDARDAEDAIRYRDGYKFDGLRLRVEFAHGGRGYSSPVDRYSGSGSSRGVSKHSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSCDTRRSYSRSLSRSPNMSRSRSRSRSYSYSSRSSRSLSPKVKRTRRSLSRSRSLSRSESANSSVRSERSQSVNSGDRY* | 273 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr6g0300 | 272 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 3 | 258 | - | - | |
| Tpr6g0300 | 272 | Gene3D | - | 2 | 107 | IPR012677 | - | |
| Tpr6g0300 | 272 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 110 | 172 | IPR000504 | GO:0003723 | |
| Tpr6g0300 | 272 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 75 | IPR000504 | GO:0003723 | |
| Tpr6g0300 | 272 | CDD | RRM2_SF2_plant_like | 108 | 183 | - | - | |
| Tpr6g0300 | 272 | Gene3D | - | 108 | 185 | IPR012677 | - | |
| Tpr6g0300 | 272 | PANTHER | PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN | 3 | 258 | - | - | |
| Tpr6g0300 | 272 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 175 | IPR035979 | GO:0003676 | |
| Tpr6g0300 | 272 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 108 | 186 | IPR000504 | GO:0003723 | |
| Tpr6g0300 | 272 | MobiDBLite | consensus disorder prediction | 194 | 231 | - | - | |
| Tpr6g0300 | 272 | CDD | RRM1_SF2_plant_like | 8 | 78 | - | - | |
| Tpr6g0300 | 272 | MobiDBLite | consensus disorder prediction | 189 | 272 | - | - | |
| Tpr6g0300 | 272 | MobiDBLite | consensus disorder prediction | 247 | 272 | - | - | |
| Tpr6g0300 | 272 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Tpr6g0300 | 272 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Tpr6g0300 | 272 | SMART | rrm1_1 | 109 | 178 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr6g0300 | Tpr-Chr6 | 2420600 | 2425248 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr6g0300 | 3 | 170 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.590 | 4.53e-07 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr6g0300 | K12890 | - | gmx:100794282 | 347.821 |