Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0275 ATGTATGCTTCGGTAACAGATAGGGGATATGAAGGAAGTGTTGGAGGTTCTGGAACTATTTTGATTCCGAGTCGTTTTGTTTGGCGTCATGGTGGAAGAAGAGTGTTTCTCACTGGTTCTTTCACCAGATGGTCGGAACATATTCCTATGTCTCCGATGGAAGGATGCCCTTCTGTGTTTCAGGTTATTTGCAGCTTGATGCCAGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCGGCATGATATTGAGCAGCCAATTGCAAATGGGACCTATGGAGTAGTAAATACTATTTATGTATTGAGAGAACCGGATATTTTACCTGCCATCTTAAGTGCTGAAACAACCAGTAGGTCCCACATGGAGGTTGATAATGATGTCTTTGGGCATGCGGAAGCTAATCCAAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGTCGCCGTATATCTGAATTCTTGTCCGGTCAAACTGCATATGAACTGCTTCCCGAATCTGGGAAGGTCATTGCTTTGGATGTAAATTTACCAGTTAAGCAAGCATTCCATGTTCTGTATGAGCAGGATGTATCTATGGCCCCTCTATGGGATTTTCACAGCAGTCGGTTTGTTGGAGTGCTTAGTGCAATGGACTTCATTCTCATATTGAAAGAGTTGGGGAATCATGGATCAAATTTGACTGAAGAACAACTTGAGACTCATACTATAGCAGCCTGGAAAGAGGGAAAATTAAAGCAACGCAGGGCACTTGATATTAATGGGGTATCAGATCCTCACTGTTTTGTTCATGCTGGGCCCAAGGAATGCCTAAAAGACGTGGCTTTGAAGGTTTTGCAAAACAAGGTGTCAACAATTCCTATCATTCATTCTTCTCCAGAGGATGGACCAATTCCCCAACTGCTGCATCTTGCCTCCCTATCAGGAATTCTAAAATGTATATGCAGGCATTTTAAGCACTCTGCTGGTTCTTTGCCCATTCTTCAACTTCCTATTGGTTCAATACCTTTGGGTACATGGGTGCCTAGAGTTGGGGATCCAAATGGACAGCCACTCGCAATGCTAAGGCCAAATGCTTCTCTTGGTGCTGCCTTGTCGATGTTTGTCCAAGCTAAAGTTAGCTCAATACCAGTTGTGGATGATAACGATTCATTGCTCGACATATATTCAAGAAGCGATATTACTGCATTGGCTAAAGATAAAGCATATGCTCGAATATCCCTCGATGAAATTAGTATTCATCAGGCATTACTTTTGGGACAAGATGCAAATGCTCCTTATGGGCTTTACAATGGCCACAGATGTCATATGTGTTTGAGGTCTGATTCGTTGCACAAAGTGATGGAGCGGTTGGCTAGTCCTGGGGTTAGGAGACTTGTGATTGTGGAGGCTGGTAGCAAGCGTGTGGAAGGGATTATTTCATTAAGTGATGTTTTCAGATTCTTATTGGGCTAG 1455 0.4323 MYASVTDRGYEGSVGGSGTILIPSRFVWRHGGRRVFLTGSFTRWSEHIPMSPMEGCPSVFQVICSLMPGYHQYKFNVDGEWRHDIEQPIANGTYGVVNTIYVLREPDILPAILSAETTSRSHMEVDNDVFGHAEANPRMSESDLEVSRRRISEFLSGQTAYELLPESGKVIALDVNLPVKQAFHVLYEQDVSMAPLWDFHSSRFVGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEGKLKQRRALDINGVSDPHCFVHAGPKECLKDVALKVLQNKVSTIPIIHSSPEDGPIPQLLHLASLSGILKCICRHFKHSAGSLPILQLPIGSIPLGTWVPRVGDPNGQPLAMLRPNASLGAALSMFVQAKVSSIPVVDDNDSLLDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDANAPYGLYNGHRCHMCLRSDSLHKVMERLASPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0275 484 CDD E_set_AMPKbeta_like_N 25 100 - -
Tpr6g0275 484 Gene3D - 320 483 IPR046342 -
Tpr6g0275 484 Pfam CBS domain 351 395 IPR000644 -
Tpr6g0275 484 Pfam CBS domain 435 483 IPR000644 -
Tpr6g0275 484 Gene3D Immunoglobulins 19 103 IPR013783 -
Tpr6g0275 484 SUPERFAMILY CBS-domain pair 350 483 IPR046342 -
Tpr6g0275 484 SMART cbs_1 351 399 IPR000644 -
Tpr6g0275 484 SMART cbs_1 434 483 IPR000644 -
Tpr6g0275 484 SMART cbs_1 169 218 IPR000644 -
Tpr6g0275 484 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 484 - -
Tpr6g0275 484 ProSiteProfiles CBS domain profile. 163 225 IPR000644 -
Tpr6g0275 484 ProSiteProfiles CBS domain profile. 345 405 IPR000644 -
Tpr6g0275 484 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 484 - -
Tpr6g0275 484 SUPERFAMILY E set domains 22 102 IPR014756 -
Tpr6g0275 484 Gene3D - 140 319 IPR046342 -
Tpr6g0275 484 SUPERFAMILY CBS-domain pair 150 320 IPR046342 -
Tpr6g0275 484 Pfam Glycogen recognition site of AMP-activated protein kinase 22 107 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0275 Tpr-Chr6 2232707 2240327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0275 26 112 Protein tyrosine phosphatase (PTP) family AT3G01510 34.444 3.04e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0275 - - gmx:100778117 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0275 6 2232707 2240327 Tpr6g0275 6 2232707 2240327 ECH