Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0274 ATGGACAGTTATACGGAATATAACAAAGCAATGAAACTAAACTTTATTATGAAGATGAAGATGAAAGCAATGCTTTGTGCTGGTTCCGTTCGCGCCAAAAACACCATGAACTTTGGTTGGTACAGTTTTAACCCCGGTTCTTTTCTTAATATTTTGAAAACTTATGGTGAAAGTGGTAATTACTATGGTCAATGGAGTGCTATTGGGAGGACGGCCGTGACAACTACATTGGCCGGTTGCGCTTCGGCTCTCATGACTTTGTTTGGTAAAAGGATTCAAACAGCTGAGAAATTCCACTATGATGATCCTCTTGAAGCTCCACAACTTCATGGTAGTTCTGGTACATGGGGGAATATTTTCACTGCCTTGTTTGCCAAGAAACAATATGTGAATGAGATTTATGGTGGTTCAATTGATAGGCCTTATGGTTTATTGTTGAGAGGTGGTGGAAGATTATTGGCTGCAGATGTTGTTCAGATTTTGGCTATTGAGGTCGGCGTCAATGTTAAGAGGTTACATTCAACTGAAGGTTCAGAAATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCACCACAAAACTTCCCTTCTTGATGCTTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATTACTCAGCATCTAGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACGTTTCTTGATACTCCTGGTCATGCTGCATTTAGTGAAATGCGCGCAAGAGGTGCAGCAGTCACATATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTAATGCCCCAAACACTTGAAGCCGTGTCCCATGCAAAATCAGCTAATGTACCAATTGTAGTTGCAATCAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTACAGCTTGCTTCCGAGGGCTTGCTGCTGGAGGAGATGGGTGATATTCAGGTCGTTGAAGTTTTAGCGATTAAAAAGACTGGATTGGATAACCTAGAGGTAGCTTTACTCCTTCAGGCTGATATGATGGATCTTAAAGCACGATTTGATGGGCCTGCTCGAGCATATGTGGTTGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTGACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGACAGCATGTGGTTGTCGGCTCACAGTGGGGAAGAATAAGGGCTATTAAAGATGCAGCAGGGAGGTTAACTCAACGAGCAACTCCGGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCTGGTGATGATGTCATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAAAAGAAATCTGAAGAGGACAGGCTTAGGGGCAAGATGGTGCAGAATATCCCAACTACTTCAGATGATACTGAGGAGGTTCCGCTGAGGGTTGAAATGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTTACAGATGCTTTGACAACTTTAAATAGTCCTCAGGTTTCTGTGAATATTGTCTGTTGTAAGGTTGTTGAAGGTTTAGTGAACAGGACAGCAACCATGAGGCTTCTGCGGAGCGGTGATGTGGTGTTTGAAGGACCTTGTTCATCTCTTAAGAAGGAGAAACAGGATGTGGATTCTGTGAAGAAGGGAATTGAGTGTGGATTAGTTATCAGTAACTGTCATGATTTTCAGATTGGTGATGTTATTCAGTGCTTAGAACAAGTAGTTAGGAAGCCCAAGTTTATTAAGTCGGAGAGTGGTGCTGTTCGAATAGAGTGCTGA 1812 0.4354 MDSYTEYNKAMKLNFIMKMKMKAMLCAGSVRAKNTMNFGWYSFNPGSFLNILKTYGESGNYYGQWSAIGRTAVTTTLAGCASALMTLFGKRIQTAEKFHYDDPLEAPQLHGSSGTWGNIFTALFAKKQYVNEIYGGSIDRPYGLLLRGGGRLLAADVVQILAIEVGVNVKRLHSTEGSEILPRPAVVTVMGHVDHHKTSLLDALRQTSVAAREAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSEMRARGAAVTYIVVLVVAADDGVMPQTLEAVSHAKSANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGDIQVVEVLAIKKTGLDNLEVALLLQADMMDLKARFDGPARAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDAAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKSEEDRLRGKMVQNIPTTSDDTEEVPLRVEMPVIVKADVQGTVQAVTDALTTLNSPQVSVNIVCCKVVEGLVNRTATMRLLRSGDVVFEGPCSSLKKEKQDVDSVKKGIECGLVISNCHDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0274 603 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 153 515 - -
Tpr6g0274 603 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 153 515 IPR015760 -
Tpr6g0274 603 CDD IF2_eIF5B 186 348 - -
Tpr6g0274 603 Gene3D Ammonium transporter AmtB like domains 96 168 IPR029020 -
Tpr6g0274 603 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 517 594 IPR015760 -
Tpr6g0274 603 SUPERFAMILY Translation proteins 355 437 IPR009000 -
Tpr6g0274 603 Gene3D Translation factors 487 588 - -
Tpr6g0274 603 SUPERFAMILY Ammonium transporter 37 164 - -
Tpr6g0274 603 CDD IF2_mtIF2_II 357 452 IPR044145 -
Tpr6g0274 603 Pfam Translation-initiation factor 2 481 519 IPR023115 -
Tpr6g0274 603 Pfam Ammonium Transporter Family 95 163 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tpr6g0274 603 Pfam Ammonium Transporter Family 38 94 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tpr6g0274 603 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 517 594 - -
Tpr6g0274 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 372 IPR027417 -
Tpr6g0274 603 SUPERFAMILY Translation proteins 512 588 IPR009000 -
Tpr6g0274 603 Gene3D - 180 353 IPR027417 -
Tpr6g0274 603 Gene3D Translation factors 354 468 - -
Tpr6g0274 603 CDD mtIF2_IVc 512 581 - -
Tpr6g0274 603 TIGRFAM small_GTP: small GTP-binding protein domain 185 323 IPR005225 GO:0005525
Tpr6g0274 603 Gene3D Ammonium transporter AmtB like domains 35 95 IPR029020 -
Tpr6g0274 603 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 182 351 IPR000795 GO:0003924|GO:0005525
Tpr6g0274 603 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 482 519 IPR036925 -
Tpr6g0274 603 Pfam Elongation factor Tu GTP binding domain 187 336 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0274 Tpr-Chr6 2228495 2232087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0274 36 169 Inorganic Solute Cotransporters AT1G64780 49.451 3.41e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0274 K02519 - gmx:100781314 602.438