LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g0274	ATGGACAGTTATACGGAATATAACAAAGCAATGAAACTAAACTTTATTATGAAGATGAAGATGAAAGCAATGCTTTGTGCTGGTTCCGTTCGCGCCAAAAACACCATGAACTTTGGTTGGTACAGTTTTAACCCCGGTTCTTTTCTTAATATTTTGAAAACTTATGGTGAAAGTGGTAATTACTATGGTCAATGGAGTGCTATTGGGAGGACGGCCGTGACAACTACATTGGCCGGTTGCGCTTCGGCTCTCATGACTTTGTTTGGTAAAAGGATTCAAACAGCTGAGAAATTCCACTATGATGATCCTCTTGAAGCTCCACAACTTCATGGTAGTTCTGGTACATGGGGGAATATTTTCACTGCCTTGTTTGCCAAGAAACAATATGTGAATGAGATTTATGGTGGTTCAATTGATAGGCCTTATGGTTTATTGTTGAGAGGTGGTGGAAGATTATTGGCTGCAGATGTTGTTCAGATTTTGGCTATTGAGGTCGGCGTCAATGTTAAGAGGTTACATTCAACTGAAGGTTCAGAAATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCACCACAAAACTTCCCTTCTTGATGCTTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATTACTCAGCATCTAGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACGTTTCTTGATACTCCTGGTCATGCTGCATTTAGTGAAATGCGCGCAAGAGGTGCAGCAGTCACATATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTAATGCCCCAAACACTTGAAGCCGTGTCCCATGCAAAATCAGCTAATGTACCAATTGTAGTTGCAATCAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTACAGCTTGCTTCCGAGGGCTTGCTGCTGGAGGAGATGGGTGATATTCAGGTCGTTGAAGTTTTAGCGATTAAAAAGACTGGATTGGATAACCTAGAGGTAGCTTTACTCCTTCAGGCTGATATGATGGATCTTAAAGCACGATTTGATGGGCCTGCTCGAGCATATGTGGTTGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTGACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGACAGCATGTGGTTGTCGGCTCACAGTGGGGAAGAATAAGGGCTATTAAAGATGCAGCAGGGAGGTTAACTCAACGAGCAACTCCGGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCTGGTGATGATGTCATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAAAAGAAATCTGAAGAGGACAGGCTTAGGGGCAAGATGGTGCAGAATATCCCAACTACTTCAGATGATACTGAGGAGGTTCCGCTGAGGGTTGAAATGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTTACAGATGCTTTGACAACTTTAAATAGTCCTCAGGTTTCTGTGAATATTGTCTGTTGTAAGGTTGTTGAAGGTTTAGTGAACAGGACAGCAACCATGAGGCTTCTGCGGAGCGGTGATGTGGTGTTTGAAGGACCTTGTTCATCTCTTAAGAAGGAGAAACAGGATGTGGATTCTGTGAAGAAGGGAATTGAGTGTGGATTAGTTATCAGTAACTGTCATGATTTTCAGATTGGTGATGTTATTCAGTGCTTAGAACAAGTAGTTAGGAAGCCCAAGTTTATTAAGTCGGAGAGTGGTGCTGTTCGAATAGAGTGCTGA	1812	0.4354	MDSYTEYNKAMKLNFIMKMKMKAMLCAGSVRAKNTMNFGWYSFNPGSFLNILKTYGESGNYYGQWSAIGRTAVTTTLAGCASALMTLFGKRIQTAEKFHYDDPLEAPQLHGSSGTWGNIFTALFAKKQYVNEIYGGSIDRPYGLLLRGGGRLLAADVVQILAIEVGVNVKRLHSTEGSEILPRPAVVTVMGHVDHHKTSLLDALRQTSVAAREAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSEMRARGAAVTYIVVLVVAADDGVMPQTLEAVSHAKSANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGDIQVVEVLAIKKTGLDNLEVALLLQADMMDLKARFDGPARAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDAAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKSEEDRLRGKMVQNIPTTSDDTEEVPLRVEMPVIVKADVQGTVQAVTDALTTLNSPQVSVNIVCCKVVEGLVNRTATMRLLRSGDVVFEGPCSSLKKEKQDVDSVKKGIECGLVISNCHDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC*	604

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g0274	603	PANTHER	TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL	153	515	-	-
	Tpr6g0274	603	PANTHER	TRANSLATION INITIATION FACTOR IF-2-RELATED	153	515	IPR015760	-
	Tpr6g0274	603	CDD	IF2_eIF5B	186	348	-	-
	Tpr6g0274	603	Gene3D	Ammonium transporter AmtB like domains	96	168	IPR029020	-
	Tpr6g0274	603	PANTHER	TRANSLATION INITIATION FACTOR IF-2-RELATED	517	594	IPR015760	-
	Tpr6g0274	603	SUPERFAMILY	Translation proteins	355	437	IPR009000	-
	Tpr6g0274	603	Gene3D	Translation factors	487	588	-	-
	Tpr6g0274	603	SUPERFAMILY	Ammonium transporter	37	164	-	-
	Tpr6g0274	603	CDD	IF2_mtIF2_II	357	452	IPR044145	-
	Tpr6g0274	603	Pfam	Translation-initiation factor 2	481	519	IPR023115	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g0274	Tpr-Chr6	2228495	2232087	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g0274	36	169	Inorganic Solute Cotransporters	AT1G64780	49.451	3.41e-45	166

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g0274	K02519		-	gmx:100781314	602.438

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