Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0273 ATGTCAGATTCACAGTCAAATTCAGAGGTTTTTAGTGTTCGAATTGTCTCCATAGATCATTACATGGCACCGCCAATTCCAGACATCGATATCTCTTACAGCAGCTTCCATGGTGGAAAAGTGAATGAAGTTCCTGTAATAAGAGTGTATGGTTCTACTCCTGCTGGACAGAAAACTTGCTTGCACATACATGGAGCTTTACCTTATTTATATGTTCCGTGTTCGGATATACCACTTCAACTAGACCAAGGTGATGCATACACCTATACGGTAGCTGCTTCTCTCGAGAAAGCTTTGAAGCTTAAAAGCAGTGCTGGTTCATCGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCGCTCATTTGAAGAGTTTTTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCTCGTGCAGCAAATCATCTCTTGGCAGGTGCTGTTCTTGATAAAAGTTTACAGCCGCACGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTACACCTATCAAAGATGAGGTTCCGCCATCCCATGCCGGATTCTACTCACAAGAATTTAGACATCAATAACCAGCACCGAAAGGCAGATCCAGGTGCTGATGTTTGTTTAGAGTCAAAACTGTGGACATCTTCCATGATCTCAATTGACTGGATGTGGTCAGTGCCTAGTGAATTTGGTGCTTCATCAAATGATAAGGCTCACTGTCCTAAGCGTCAAAGCATCTGTGAGCTTGAAGGAGATGCTTCTGTAGATGAGATTCTTAATCAGAAATTTAAAATGTTTTCATCTCTCTCACAAACAAGCTCAAATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCGAAAACGAACGGGGATTCATGAGGCTACTATGGCTTCTGATCCTGGTAAACCACTACCTGAAGATGTCATGAAACTTCTCTCATCTGGTCTCGACTTTGAGAATAAAGTTATTCAATTGTGCAGTGAAGCTGAGACCACTTTATTTTGCACTCCTTTGGAGAAAGAATTAAGAGAAACAGACATAATAGGCTCAGCATCGCCACCAGCTTCATTGTGTGAAAATGCCAAATTGCCCGAGGAAGGGACTGCCACAAGTCTCAATTTGTTGAAAATTGGTGAAATGCAATCAGCTGAAAAGATCAGAATGTTGGACATAAAGGATGCTGATATGGAAGCACAAAATCTTCTTAAGTGGCTTGCGACTTCTCAAGCCGCAGAGGATATAAACTCTGATGATGAACTTGCTTGTGAAACAATCTTGAGTCCCTTGCTACCTGCTGCAACAATTGATAAGATGCTGGAGAAAGCGAATATGGCTTATGAGAGTGAGTCCCAGCAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGGAGGAGTTAGACCTTCCAAAGAAAAAGCCTTCTCGTTCCTTTGATCACAATTGTCCCGTTGAAGCTTCATCTGACAGTATGATACCTCAAGTTGATGGTTCTAACGATGATGAATGCTCAAGTCCATGTGCTAATTTGGCTGGCACTTCTTCTGCAGTTGAGATAAACAGGGAAAAGAAAGGAGCTTCTGAGTACCATTTACTGCACAATACAAACACACGAACAGTTACTGCAGATAAAAGGAATAGGCAATGGGGGTCTTTGCCTTTTTCCATGACCGGAAAGGTTAATAATGACGGAGAGCATACTACTTCACAAGTGGCTCATCTGTTTGAAAGTGAAACCAGGGATTCTGCTCTCTCAGATTACTTAACCACAAACGAGGTTAAAAATAATACTTGTATTAAAAGAAATGTTGGTGAAGGCGCTTCAGATTCAAAAGAAGTACATAGTTTAGTTAGCTGCTCTATACGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACATGATGAACGTGAATCTGGAACTGCAAAGAAGCTTATTTTGGACAGGCACGGGGGACCAAAAACATGCCTTTGGCAAAAACTTGAATTGGAAACAATGCAAACCGATGAATTAGAAACAGAACTCCAGACAAATTCTGATCATGAAGTGAGCAGTCGTGATAATTTAGTGTGTGGGAAACAGTCGCTTCCTTCTGGCAGTGATGGTTTTTTTAATATATCAGAAGATGAATGTTTAGGCCAACATGAAAGGAGGTGTCTAGAAGCAAGTGTGGTGTTGAGAAAATCCACAAATCAAAGTTCTTCTTCAATGCATGAAGGGCCAGACCTTCTTGAAACTTCTCATTTTATTGATGCCATGGACAAATCGATAGCTTGCAGGGAGAAAAATACCAAGGATGGAACAACTTATGCAAAACTTGTAGCTTCGGATACCTATACCCCAAGTTCCTCTTTAGATGCTCAGTTGAGAACTGATGATGATCATAAAGTCAGAGCTCCTGAGAGGTGCCAGCAAACTGATTCTGCTGCTTCAGGTAGTAGACAGAACTCGTTAATTGATGACAAAGTGTCGGGCAAAAGTAACTGCATGGATAAAAAAAATTGTGGTAGCATATGTTTTGTGCAGCATGAACAGATGAAGCCTTACGAGCATGCTGTTGGAAAAAGTGCTGAAAGTGACACAAGAGTATTGCTAAGTGAAAAGGTCGATAATCAAAAGCTGGATAAAAAATTGTTGGGTGAGACTGTTGGCTCAGAACCCATTGTTGATGACCTGAAGAGTAATCACGTGAAATTAACTGAAATAACCATAGGCAATAACTCTTTAGTCGACAAGAATCTTGAAAGTAATTTGTCGTTGTCAACCTTCTCTGATACCCATTTACATTTGGACGAGGATGATGAAATGCCAGGGAATGCTCTGGATGTTTTTCTTCCTATTTCTGCAAGGAATTCCCAGAAACAGATGGAATCTTGGAAAAAGTGTGTTACTATTAAAACCCCCGGATCCTCTGGGAGAAACAGTGTTTCCACTTACTATCAAAATGATGGCTCTCACCTATACCTATTAACACCTAATATTTTGCCTCCTGCTGCCAGTTCTGTGCAGAGATGGCTATTTTGTGATGAGAGAGAACCTGATGCAGAGGACCAGGATGTACCTAAATGCACATCTGGACCTTCTCTTAGGCATTCTCCTGATCAAGTGCGTCAAGAACCTGGTGCAGAGGACAAGGTTGTGTCTAAATGCGCATCTGGACCTCCTCTTAGGCCTGAGCTGTATCAAGATGCTGGCACAGAAAAGAAGCTTCCATGCATTAGCGAAGGACAAACAGAAGGAATAAAAGCATGCATGGATCGCTCTCAAGATATTTCGCAGATATCAGGCCCTGGTGAGAATTCAAGTTTTACCCCTCTAAGTCAAACTGGATTTCGGGACCCTGCAAGTGTTGGCCGTGGACAGCAATTGACATTACTTAGTATAGAGGTGCTTGCAGAATCTAGAGCAGACCTTTTACCTGATCCTCAATTTGATGGGGTGAACATTGTAGCTCTTGGTTTTCAGAACGATTGCGATGCTACTATTAAAGTTCAAGTTCTTTTGCATAGTAAATTTGTACCTTGTCAGAGAAGTCTTGATGGCTTATCAGACTGCAAAGTACTGAACTTCACTGATGAGAAGCACTTGTTTAAAGAATTTATGAAGATTGTGTCTTCATCTGACCCAGATATATTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTGGGATTACTTAATGATTTGTCTCGCACTCCATCTAATTCCTGGATTAATTCTCAAGACACTGAAACATCTGAAAAAAGTATCTTGGAACCGGACATCTCGGATACTCCTAGTCTAGATTGTTGTGCGCAACAAAGTTCAATAATTGAGGATGAATGGGGACGTACACATGCTAGCGGAGTTCATGTTGGTGGAAGAATTGTCCTTAATTTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCGGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGTAAAGTTCCTTCACTTAACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCAGGGAAAGCAAGATATCAGTGTATCAAATATGTTATGGATAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGTTCACAATATCGGGTTGAATCCATGTTTTTGAGGTTGGCCCACACACAAAACTATGTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCGCTAGTAATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTCGTGCTTGACTTCCAATCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGGGGCATCAAAGACTAACATTCTTGGGGTTAGTCCATTTTCACCAGAACGACATGTTCTGCAGGATTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCAAAGAGGCATACTTCCCCGTCTATTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGCCTCCTTCAGAGCAAGTCCTTCAGCGGATATTTAATGCACGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGCATTGTTCAATGTGGACGGTGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTGTCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCAAGTCCCATCACCTTGAAGATGGAGAAAGTTTATCACCCGTGTTTCCTCATTACTAAAAAGAGATATGTTGGCTACAGTTATGAAAGCCCCAATCAAATTGAACCTGTTTTTGACGCCAAAGGTATTGAAACAGTACGCAGGGACACGTGTGAAGCAGTTGCAAAAATAATGGAGCGATCTTTGAGACTTTTTTTTGAGCACCAGAGTGTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCAGGCAGAGTTTCCCTTAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGGTTGATCGTAGGGCTGAACCACGTTATGCAGAGAGAATACCTTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTTGATCCATTGGAAGTCTTGGCAATTAATTCCCCATTCAGAATAAATGATTTATATTACATTAATAAGCAAATAATACCGGCTTTACAGCGAGTATTTGGGCTTGTTGGTGCTGACCTGAACCAGTGGTTTGCAGAGATGCCTCGCCCTATAAGAGAAGCTTCTGTAAAACATGCATTCACTCCAAACTTCCATCGAACCAGAATTGATTATTACTATCTCTCAAAACACTGTGTACTCTGTGGTGAGTTGGTCCAGGCATCAGCCCGTTTATGCAATCAATGTTCTGAAAATGAGGTGGCTGCTGCGACAGCAGTGATTGGTAAAACTTCAAAGTTGGAGCAGGAGATGCAACATCTTGTGTCTATATGTCACCACTGTGGAGGCGGTGATAGGCTTCTTGAAAGTGGTGTGAAATGCACATCGATTTCATGCTTGGTGTTTTATGAGAGGCGAAAAGTTCAGAAAGAGTTACTAGCCGCCACCCATGTTGCTGCAGACAAAGGCTTCTACCCAAAATGCACGGTAGAATGGTTTTGA 6006 0.4136 MSDSQSNSEVFSVRIVSIDHYMAPPIPDIDISYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDQGDAYTYTVAASLEKALKLKSSAGSSRQHVHGCSLVRARKFYGYRSFEEFFVKIYLYYPQDVSRAANHLLAGAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPMPDSTHKNLDINNQHRKADPGADVCLESKLWTSSMISIDWMWSVPSEFGASSNDKAHCPKRQSICELEGDASVDEILNQKFKMFSSLSQTSSNVNMVQSLVPIWEEQRKRTGIHEATMASDPGKPLPEDVMKLLSSGLDFENKVIQLCSEAETTLFCTPLEKELRETDIIGSASPPASLCENAKLPEEGTATSLNLLKIGEMQSAEKIRMLDIKDADMEAQNLLKWLATSQAAEDINSDDELACETILSPLLPAATIDKMLEKANMAYESESQQECQDILDSIDDMEELDLPKKKPSRSFDHNCPVEASSDSMIPQVDGSNDDECSSPCANLAGTSSAVEINREKKGASEYHLLHNTNTRTVTADKRNRQWGSLPFSMTGKVNNDGEHTTSQVAHLFESETRDSALSDYLTTNEVKNNTCIKRNVGEGASDSKEVHSLVSCSIRDLMRRKRSYRVEHDERESGTAKKLILDRHGGPKTCLWQKLELETMQTDELETELQTNSDHEVSSRDNLVCGKQSLPSGSDGFFNISEDECLGQHERRCLEASVVLRKSTNQSSSSMHEGPDLLETSHFIDAMDKSIACREKNTKDGTTYAKLVASDTYTPSSSLDAQLRTDDDHKVRAPERCQQTDSAASGSRQNSLIDDKVSGKSNCMDKKNCGSICFVQHEQMKPYEHAVGKSAESDTRVLLSEKVDNQKLDKKLLGETVGSEPIVDDLKSNHVKLTEITIGNNSLVDKNLESNLSLSTFSDTHLHLDEDDEMPGNALDVFLPISARNSQKQMESWKKCVTIKTPGSSGRNSVSTYYQNDGSHLYLLTPNILPPAASSVQRWLFCDEREPDAEDQDVPKCTSGPSLRHSPDQVRQEPGAEDKVVSKCASGPPLRPELYQDAGTEKKLPCISEGQTEGIKACMDRSQDISQISGPGENSSFTPLSQTGFRDPASVGRGQQLTLLSIEVLAESRADLLPDPQFDGVNIVALGFQNDCDATIKVQVLLHSKFVPCQRSLDGLSDCKVLNFTDEKHLFKEFMKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNDLSRTPSNSWINSQDTETSEKSILEPDISDTPSLDCCAQQSSIIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPSLNHKVLTKWFSSGPGKARYQCIKYVMDRAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVGASKTNILGVSPFSPERHVLQDLKDQILLTPNGVMFVPSKVQRGILPRLLEEILSTRIMVKQAMKKLPPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTVKESFQIGSEIASAITAMNPSPITLKMEKVYHPCFLITKKRYVGYSYESPNQIEPVFDAKGIETVRRDTCEAVAKIMERSLRLFFEHQSVLEVKTYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAINSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFAEMPRPIREASVKHAFTPNFHRTRIDYYYLSKHCVLCGELVQASARLCNQCSENEVAAATAVIGKTSKLEQEMQHLVSICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLAATHVAADKGFYPKCTVEWF* 2002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0273 2001 SMART polmehr3 1140 1646 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr6g0273 2001 ProSitePatterns DNA polymerase family B signature. 1634 1642 IPR017964 GO:0000166|GO:0003676
Tpr6g0273 2001 Gene3D - 1168 1450 IPR036397 GO:0003676
Tpr6g0273 2001 Gene3D Helix hairpin bin 1533 1593 - -
Tpr6g0273 2001 Gene3D Palm domain of DNA polymerase 1453 1698 IPR023211 -
Tpr6g0273 2001 Gene3D DNA Polymerase, chain B, domain 1 29 195 - -
Tpr6g0273 2001 CDD POLBc_zeta 1415 1863 - -
Tpr6g0273 2001 Pfam C4-type zinc-finger of DNA polymerase delta 1900 1973 IPR025687 -
Tpr6g0273 2001 Pfam DNA polymerase family B 1408 1855 IPR006134 GO:0000166|GO:0003677
Tpr6g0273 2001 SUPERFAMILY Ribonuclease H-like 27 1413 IPR012337 -
Tpr6g0273 2001 MobiDBLite consensus disorder prediction 819 838 - -
Tpr6g0273 2001 Gene3D - 1709 1873 IPR042087 -
Tpr6g0273 2001 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1994 IPR030559 GO:0006281|GO:0016035|GO:0019985
Tpr6g0273 2001 PRINTS DNA-directed DNA-polymerase family B signature 1467 1480 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr6g0273 2001 PRINTS DNA-directed DNA-polymerase family B signature 1576 1588 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr6g0273 2001 PRINTS DNA-directed DNA-polymerase family B signature 1632 1640 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr6g0273 2001 SUPERFAMILY DNA/RNA polymerases 1454 1867 IPR043502 -
Tpr6g0273 2001 MobiDBLite consensus disorder prediction 823 838 - -
Tpr6g0273 2001 MobiDBLite consensus disorder prediction 1032 1065 - -
Tpr6g0273 2001 CDD DNA_polB_zeta_exo 1139 1389 - -
Tpr6g0273 2001 Pfam DNA polymerase family B, exonuclease domain 55 195 IPR006133 -
Tpr6g0273 2001 Pfam DNA polymerase family B, exonuclease domain 1202 1293 IPR006133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0273 Tpr-Chr6 2211250 2227299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0273 1222 1983 Core DNA Replication Machinery Family AT5G63960 29.702 3.11e-88 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0273 K02350 - gmx:100777934 3011.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0273 6 2211250 2227299 Tpr6g0273 6 2211250 2227299 ECH