Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0256 ATGGATCATGAAGGAAACAACCAGAATCCACAAATGGAGGTTGTCGGGAGCGGAGGTCAAATGCCGTACGGTTCTAACCCATATCAGTCGAACCAAATGACTGGGGCTACAGGATCAGTTGATACGTCGGTCGGGGGCATGCAGTCCACTGGTCAACCTGCTGGACCTCAGCTGGGTCAGCATGAATTTGCTTATCAGCATATTCATCAGCGGCAACAACAGCAACTTCAGCAACAGCTGCAAGCCTTTTGGGAAAATCAGACCCAAGAAATGGAAAAGGTTACTGATATCAAGAACCACAGTCTTCCCCTGGCAAGGATTAAGAAGATTATGAAGGCCGATGAGGATGTTAGAATGATATCTGCTGAGGCACCAATCTTATTTGCAAAGGCCTGTGAGCTGTTCATATCGGAGTTAACTCTGCGTTCTTGGAACCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAAAATGATATTGCTGCAGCAATCACAAGGACTGATGTCTATGATTTCCTGGTTGACATTGTTCCCCGTGATGACCTGAAAGATGCTCTTCCATACTGCTACATGCCACCTCAGCAGCCTGCGACGGACCCAAATATGTATGCCGAGCAGCCTCATCCCTTCATGGCACCACCAATGTGGCCACAGCCTTCCGACCAGTGA 669 0.4813 MDHEGNNQNPQMEVVGSGGQMPYGSNPYQSNQMTGATGSVDTSVGGMQSTGQPAGPQLGQHEFAYQHIHQRQQQQLQQQLQAFWENQTQEMEKVTDIKNHSLPLARIKKIMKADEDVRMISAEAPILFAKACELFISELTLRSWNHTEENKRRTLQKNDIAAAITRTDVYDFLVDIVPRDDLKDALPYCYMPPQQPATDPNMYAEQPHPFMAPPMWPQPSDQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0256 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 164 IPR003958 -
Tpr6g0256 222 SUPERFAMILY Histone-fold 30 173 IPR009072 GO:0046982
Tpr6g0256 222 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Tpr6g0256 222 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 184 222 - -
Tpr6g0256 222 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 185 - -
Tpr6g0256 222 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 185 - -
Tpr6g0256 222 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 184 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0256 Tpr-Chr6 2090499 2093052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0256 12 220 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.205 1.49e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr6g0256 CBFD_NFYB_HMF 3.6e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0256 K08066 - gmx:100527803 333.954