Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0255 ATGCAAGCCACTGGTCAACCTGCTGGAGTTCAGTTGGTTCAGCATCAACTTGCTTATCAGCATATTCAGCAGCAGCAGCAACTTCAGCAACAACTGCAAGCCTTTTGGGCAAACCAGTACCAAGAAGTCAAAAAGGTTACTAATTTCAAGAAGAACTGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAAGATGTCAGAATGGTATCGGATGACGCGCCTGTGATACTTGCAAAGGCCTGTGAGATGTTCATATCAGAGTTAACCATGCGTTCACGGAACCACAGTAAAACCAGAACACTTCAGAAGAATGATATTGCAGCAGCAGTCGCGGAGACTAATACCTTTGATTTCCTGGTGGACATTGTGCCTCACGAGAAAATGACTGATTATCCTCCTGCATTTCAGTTTCCAAGGAACTTTAGTAATGAGGGTGGGTGCCAAACTGTGAATCCAGAAGGTCCATTGTTGCCATCAGAAACTATAGGTGACAGTTTACCTGTATCTCCTGCATTTCAGATTATAGAAGCGGATGAGGACATCAGCGAGGAAAATTCTGATTAA 573 0.4398 MQATGQPAGVQLVQHQLAYQHIQQQQQLQQQLQAFWANQYQEVKKVTNFKKNCLPLARIKKIMKADEDVRMVSDDAPVILAKACEMFISELTMRSRNHSKTRTLQKNDIAAAVAETNTFDFLVDIVPHEKMTDYPPAFQFPRNFSNEGGCQTVNPEGPLLPSETIGDSLPVSPAFQIIEADEDISEENSD* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0255 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 113 IPR003958 -
Tpr6g0255 190 SUPERFAMILY Histone-fold 41 137 IPR009072 GO:0046982
Tpr6g0255 190 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 134 - -
Tpr6g0255 190 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 134 - -
Tpr6g0255 190 Gene3D Histone, subunit A 15 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0255 Tpr-Chr6 2087720 2109217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0255 16 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 65.323 4.24e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr6g0255 CBFD_NFYB_HMF 7.6e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0255 K08066 - gmx:100785287 161.384