Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0254 ATGGATCATCAAGGAAACAACCAGAATGCGCAAATGGGGGTTGTCGGTAGCGGAGGTCAAATGCCGTACGGATCTAACACAGTTCAGTCAAACAAACTTCAGCAAAAGCTTCAAGTGTTTTGGGAAAATCAAATCCAAGAAATCGAAAATGTCACTGATATCAAGAACCACAGCCTTCCCCCGACAAGGATTAAAAAGATTATGAAGGCTGACGAAGATGTTAAAATGATATCTGCAGAGGCCCCAGTCTTATTTGTGAAGGCCTGTGAAATGTTTATATCGGAGTTAACTCTGCGGTCTTGGAACAACACTGAAGAAAACAATAGGAGGACACTTAAGAAGAATAATATTGCTGCAGCAATAGCAACGACTGATATCTATGATTTTCTGGTCGACATTGTTCCCCGCGAGGACCTGAAAGATGAAGTGCTGGCATCAATCCCAAGGGGAACAATGCATGTTGGTGGGCCTGCTGATGCTCTTCCATATTGCTACAATGCACCTCAGCAGCCTGTGATGGACCCAAATATGCATGCTGAGCAGCCTCATCCCTTCATGGCACCACCAATGTGGCCACAGCCTTCCGACCAGCGACCACCATCTCCAGATCACTAG 615 0.4569 MDHQGNNQNAQMGVVGSGGQMPYGSNTVQSNKLQQKLQVFWENQIQEIENVTDIKNHSLPPTRIKKIMKADEDVKMISAEAPVLFVKACEMFISELTLRSWNNTEENNRRTLKKNNIAAAIATTDIYDFLVDIVPREDLKDEVLASIPRGTMHVGGPADALPYCYNAPQQPVMDPNMHAEQPHPFMAPPMWPQPSDQRPPSPDH* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0254 204 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 121 IPR003958 -
Tpr6g0254 204 SUPERFAMILY Histone-fold 30 130 IPR009072 GO:0046982
Tpr6g0254 204 MobiDBLite consensus disorder prediction 183 204 - -
Tpr6g0254 204 Gene3D Histone, subunit A 24 136 IPR009072 GO:0046982
Tpr6g0254 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 29 204 - -
Tpr6g0254 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 32 - -
Tpr6g0254 204 MobiDBLite consensus disorder prediction 185 204 - -
Tpr6g0254 204 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 29 204 - -
Tpr6g0254 204 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0254 Tpr-Chr6 2086947 2101892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0254 40 191 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.038 1.30e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr6g0254 CBFD_NFYB_HMF 9.2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0254 K08066 - gmx:100527803 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0254 6 2086947 2101892 Tpr6g0254 6 2086947 2101892 ECH
Tpr6g0254 6 2086947 2101892 Tpr1g1475 1 13459517 13461663 PCT