Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0253 ATGGATCATCAAGGACATAATCAGAATCCGCAAATGGGGGTTGTCGGTAGTGGAGGTCAAATGCCGTACGGTTCTAACCCATATCAGTCAAACCAAATGACTGGAGCCCCAGGATCAGTTGTTACGTCAGTCGGGGGCATGCAATCCACCGGTCAACCTGCTGGAGGTCAGATGGGTCAACATCAACTTGCTTATCAGCATATTCATCAGCAGCAACAACAGCAACTTCAGCAACAGCTGCAAGCCTTTTGGGCAAATCAGTATCAGGAAATTGAAAAGGTTACTGATTTTAAGAACCACAGCCTTCCCTTGGCAAGGATAAAAAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCTGCTGAGGCACCAGTCATATTTGCAAGGGCCTGTGAGATGTTTATATTGGAGTTAACTCTGCGTTCTTGGAACCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAGAATGATATTGCTGCTGCAATCACAAGGACTGATATCTTTGATTTCCTTGTTGACATTGTTCCCCGGGAGGACCTGAAAGATGAAGTGCTGGCATCGATTCCAAGGGGAACAATGCCTGTTGGTGGGCCTGCTGATGCTCTTCCATACTGCTACATGCCACCTCAGCATGCCTCTCAAGTTGGACCTACCGGTGTCATAATGGGCAAGCCTGTGATGGACCCGAATATGTATGCTCAGCAGCCTCATCCCTACATGGCACCACAAATGTGGCCACAGCCTTCAGACCAGCGACCACCATCTCCAGATCACTAG 783 0.4751 MDHQGHNQNPQMGVVGSGGQMPYGSNPYQSNQMTGAPGSVVTSVGGMQSTGQPAGGQMGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALPYCYMPPQHASQVGPTGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPSDQRPPSPDH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0253 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Tpr6g0253 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Tpr6g0253 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
Tpr6g0253 260 Pfam Core histone H2A/H2B/H3/H4 57 164 IPR007125 GO:0003677
Tpr6g0253 260 SUPERFAMILY Histone-fold 54 173 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0253 Tpr-Chr6 2078104 2080614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0253 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.694 1.60e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr6g0253 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0253 K08066 - gmx:100527803 417.927