Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0252 ATGGCTTCGATGAAAACCATTTCAGTCTCACTACTCCTCACTCTCATCCTCTTGTTCTCATTCACAATAACTAACTCCCCTCCATCCCTCTCCATCACAACAAAAACAACTCCATCTCTTCGCAGCAGATCACTCCTCATCACAACAACAACCTCCTCCTGCACCTCTAAATCCAACGGAATCCTCAACTATCACTGCATTTTCCCCCAAAACCCTTCCCTCTCAATCACATCTCTCTCCATTCTCCTCTTCCTCCATTTCTACATCCTAATCAAAACCGCTTCTCACCATTTCTCAATCGTAACTACCAAACTCGCTTCTCACCTCAATCTCTCCCCTAGTATGGCCGCCGTCACACTTCTCGCTCTCGGTAACGGCTCTCCCGATGTTTTCTCATCTCTCGCCGCACTTCGCGCCGGTCAATACCGTACTGGCTTCGGCGCTATACTCTCTGCTGGAGCTTTTGTTTCTGCTCTTGTTGTTGGCTTTGTTGCGATCTACGCCGCTCCTTTTCCCGTTGATCCGGCGCCGTTTGTTAGGGATGTGTTGTTCTATTTAACTGCTGCTATGTTTCTCTTTTATGTTTATCTTAGTGCTGAGATTTTTCTATGGCAAGCCGTTGGATTCGTTGCGTTTTATCTCTTTTTTGTTGGTTTTGTGTTTTATATGGATTTGGGAATTGTGAATCGTAGTGAAAAGAGTTCTGTGGATCTTGAGGGACAAATTGAATCGTATTGCGATCAAAAATCGACGGGATCTGTTGAAAAAGTTAAACACGCTTCTGGATTTACTGGATCTTTTCGTTTGATTTCTAAAGCATGGGAGCTTCCTGTCTCAACTCTCCTAAGATTGACGGTCCCTCAACCAGCACCATCGCAATGGAGCAGATTTTATGCATCAGCCAATATCGCTCTTTGTCCTCTAGCCCTCTTGTATGCATGCAACTCATTCGTGCCACTTAATCATCCCATAGTTTTCCTCCTCCCCAATACTCTTTTCCCTCTTTGGTCCGTAGTGCTCATGACAAGCTTCTCTCTTGCATTTCTTCATTTTGTAATGGAAAAAGAACCCCCAAAAGCAGAGCATTTGCCTGTGGTGGTCGTGGCATTTGTGATGAGTGTGTTTTGGATATCTACCACAGCTGGAGAGCTGGTGAATTGCCTCGAAGCTTTAGGTACGCTTCTCAAAGTTCCAGCATCATTCCTTGGTCTTACGGTGCTGGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTGGCAGTTGCTAAAGCTGGTCATCCGGCAATGGCAATGGCTGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAGACGACAAATACATATCCTAAAGCCTATGAACTTAATTTCCATGTTGGTATAGTGATTGCATTTGTGTTCCTTCTTTTAAGCCTCATGGGGTCTCTCTTGGTAATCACTTGGTCCCGATTCCGAGTGCCTAGGTTTTGGGGATTCTGTCTTGTGGGCCTCTATATTGTTTTTATGGCAGTGAGTTCGGTAGTAGCCATCTTTTCAAGTTGA 1572 0.4504 MASMKTISVSLLLTLILLFSFTITNSPPSLSITTKTTPSLRSRSLLITTTTSSCTSKSNGILNYHCIFPQNPSLSITSLSILLFLHFYILIKTASHHFSIVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFPVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGIVNRSEKSSVDLEGQIESYCDQKSTGSVEKVKHASGFTGSFRLISKAWELPVSTLLRLTVPQPAPSQWSRFYASANIALCPLALLYACNSFVPLNHPIVFLLPNTLFPLWSVVLMTSFSLAFLHFVMEKEPPKAEHLPVVVVAFVMSVFWISTTAGELVNCLEALGTLLKVPASFLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNTYPKAYELNFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFWGFCLVGLYIVFMAVSSVVAIFSS* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0252 523 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 267 522 - -
Tpr6g0252 523 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 52 234 - -
Tpr6g0252 523 Pfam Sodium/calcium exchanger protein 80 221 IPR004837 GO:0016021|GO:0055085
Tpr6g0252 523 Pfam Sodium/calcium exchanger protein 366 515 IPR004837 GO:0016021|GO:0055085
Tpr6g0252 523 Gene3D - 111 237 IPR044880 -
Tpr6g0252 523 Gene3D - 299 518 IPR044880 -
Tpr6g0252 523 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 52 234 - -
Tpr6g0252 523 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 267 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0252 Tpr-Chr6 2069443 2076008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0252 10 523 Antiporters AT1G08960 67.283 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0252 K13754 - gmx:100775437 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0252 6 2069443 2076008 Tpr6g0252 6 2069443 2076008 ECH