Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0246 ATGAAAACAAACCAGCTATTCATCCTGCTCATACTACCATGTATCCTTCTTCTTCTCTCCGCCACAAAAGCCCAAGCCCAAGCCCGGAACAACACGACCAATAACGACTTCAATGCAAATTTCAACCAATTCAACCCTTCCTTCGCTATAATCATAGTTATTTTAGTTGCAGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGTCGTTGCTCCGATACACCTTCCTCCAACCTCGTTCTTCCCATCACCAACGCTCGTAGAGCAGCGCGTGGACTCGATGCATCAGTAATCGATACTTTCCCGATTCTTGAATACTCCGAAGTCAAGATCCACAAGATCGGAAAAGAAGTTCTAGAGTGTGCCGTTTGTTTAATGGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCAAAGTGTGATCACGTTTTTCACCCTGAGTGCATCGATGAGTGGTTATCTTCTCATACAACTTGTCCCGTTTGTCGTGCTAATCTCGTTCCACAACCCGGTGACTCAGTTCACGGCGTTCCTGAGTCAAACAGCGAGTTACAAACACAAGACGTTGAAGCTCAAAACGACGCCGTTCAAACACCGACGGAAGAAGTAATTAACAACGTCGCTGCTCCTGACCCGGTCTTACTTGTTGTTCCTGAAGTGATTTCGTTGGATAAAACGCTGAACCGGAACCGTACGCGTGGATCTCAATCGAACCGGACGCGTCGTTTTCCACGTTCGCATTCGACCGGCCATTCATTAATCCAACCGGGTGAAAACACGGACCGGTTTACTTTGAAACTTCCTTTTAAAGTAAGGAAACAGATAATGAACCGGCAGTTACAACGGGCGAGTAGTTTAATTACTTTACCTGGTGAAAGTAGTTTGAGACAGGGTTACCGAACCGGAGGGGAAGGAAGTAGTAGAGGAAAAAGTTCAAGATGGGTGGACCGGACTAGGAGTTTTAAATCAGACCGGTGGGTTTTTACTAGAGCACCGTCGTTTTTAGCTAGAGCATTGTCGTTTAGATCACCAAAGCCAAAAGTCAATACTAGCGACGATGAAGGAACTTCTGCTGCTGCTCCTATCATGCCATCATCAGCTGTTGACTCTGCCCGCCCTCAAAATTGA 1131 0.4624 MKTNQLFILLILPCILLLLSATKAQAQARNNTTNNDFNANFNQFNPSFAIIIVILVAALFLMGFFSIYIRRCSDTPSSNLVLPITNARRAARGLDASVIDTFPILEYSEVKIHKIGKEVLECAVCLMEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGDSVHGVPESNSELQTQDVEAQNDAVQTPTEEVINNVAAPDPVLLVVPEVISLDKTLNRNRTRGSQSNRTRRFPRSHSTGHSLIQPGENTDRFTLKLPFKVRKQIMNRQLQRASSLITLPGESSLRQGYRTGGEGSSRGKSSRWVDRTRSFKSDRWVFTRAPSFLARALSFRSPKPKVNTSDDEGTSAAAPIMPSSAVDSARPQN* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0246 376 Pfam Ring finger domain 121 164 IPR001841 -
Tpr6g0246 376 MobiDBLite consensus disorder prediction 340 376 - -
Tpr6g0246 376 CDD RING-H2_EL5_like 121 164 - -
Tpr6g0246 376 MobiDBLite consensus disorder prediction 295 316 - -
Tpr6g0246 376 PANTHER RING FINGER DOMAIN-CONTAINING 4 315 - -
Tpr6g0246 376 SMART ring_2 122 163 IPR001841 -
Tpr6g0246 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 169 IPR013083 -
Tpr6g0246 376 SUPERFAMILY RING/U-box 121 171 - -
Tpr6g0246 376 MobiDBLite consensus disorder prediction 295 309 - -
Tpr6g0246 376 MobiDBLite consensus disorder prediction 228 260 - -
Tpr6g0246 376 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Tpr6g0246 376 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0246 Tpr-Chr6 2033333 2037971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0246 3 339 Rapid Response to Elicitors AT3G05200 45.869 2.32e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0246 K10664 - gmx:100781706 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0246 6 2033333 2037971 Tpr6g0246 6 2033333 2037971 ECH
Tpr6g0246 6 2033333 2037971 Tpr1g1481 1 13567017 13568749 PCT