Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0243 ATGTGTTTACCAGAAGAAGAAAGAGAAAGAGAGAAAGCCATGGCACTAGAACCAACTCTACTATATCAACATCAACAACAAGACCCTTTTACCTACGGATTCAACAAAGACCTCTACAACTACAACTTGTTAACAGATTTTGAAGCTAATAGCTTTGACTACAGTACTTCTAACTTCAACCTTCAAAATGATCAACAACAACAAGGTTCTGTTTCCACTTTTATCAATAACCAAACAGAGAGTTACCCTTTTCAAACTAACAACTGTTCCTCATCAGAACAACCACCATTATTGTTGCCACAAATGGATGAAGTAGAAGCACTTCATGTTACAAATCCATGTTTAGAAGATAGCTCAATTTCAACTCGTTGTCGTCCTAAGAAACGCAGAGTCAAAACAAGTAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTAGAACGTAACAGAAGAAAACAAATGAATCAGTATCTCTCTGTTCTTCGTTCTCTCATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATAAACTTTGTTAAGAAGCTTGAACAAAGATTACAATTTCTTGGTGTTCAGAAACAAAAAGAGGAAAAAATTGATACTATTGTTGCAAATAAAAACAAGCCCTTTTCTGAATTTTTCACTTTTCCACAATACTCAACAAATGCTATAGTGTGTGAAAATTCTGAAGCAAATAATGGTGAGATTGAGAAAATGGGTGAAGTTCAAACTAGCAATATTGCTGATGTTGAAGTAACAATGGTTGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAAAGACCAAAACAGCTCTTGAAAATGGTTTCTAGTTTGCATGGAATGTGTTTAACAATCTTGCATCTTAATGTCACTACAACTGATGAATTTGTCTTCTATTCTCTCAGTGTTAAGGTGGAAGATAATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGTTGGAAAGGATTCACCAAGAGACATTATCAATATTAAATTAA 1050 0.3514 MCLPEEEREREKAMALEPTLLYQHQQQDPFTYGFNKDLYNYNLLTDFEANSFDYSTSNFNLQNDQQQQGSVSTFINNQTESYPFQTNNCSSSEQPPLLLPQMDEVEALHVTNPCLEDSSISTRCRPKKRRVKTSKNKEEIENQRMTHIAVERNRRKQMNQYLSVLRSLMPESYVQRGDQASIIGGAINFVKKLEQRLQFLGVQKQKEEKIDTIVANKNKPFSEFFTFPQYSTNAIVCENSEANNGEIEKMGEVQTSNIADVEVTMVESHANLKIRSKKRPKQLLKMVSSLHGMCLTILHLNVTTTDEFVFYSLSVKVEDNCKLGSVDEIAAAVYQMLERIHQETLSILN* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0243 349 Pfam Helix-loop-helix DNA-binding domain 143 194 IPR011598 GO:0046983
Tpr6g0243 349 Coils Coil 190 210 - -
Tpr6g0243 349 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 345 - -
Tpr6g0243 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 204 IPR036638 GO:0046983
Tpr6g0243 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 193 IPR011598 GO:0046983
Tpr6g0243 349 SMART finulus 148 199 IPR011598 GO:0046983
Tpr6g0243 349 Gene3D - 132 210 IPR036638 GO:0046983
Tpr6g0243 349 PANTHER MAX DIMERIZATION, MAD 14 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0243 Tpr-Chr6 1999821 2001799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0243 14 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.154 9.51e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g0243 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0243 - - gmx:100782243 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0243 6 1999821 2001799 Tpr6g0243 6 1999821 2001799 ECH
Tpr6g0243 6 1999821 2001799 Tpr1g1482 1 13601378 13603296 PCT