Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0228 ATGGCTAATCACGATCACCACAAAGATTATTGTCTATGGGACCCTAAAACAAGCCCGGCTAACAGATTAAAGAAGATCTCAATGAAAGATGCTTTTTTTAATCATAAAAACAAATCTGCTTCTACTCAAGACTTGAACCATACACAAGATTGCATTACTGACTTTGATGCTGATAAACAATCCGAATTGGTAACCGGTTGTTCAAACTTAAGGGCGAGATTTCAATTGGACAAGGCTTTTAAGACATGGAAGAAAAGATCAATTAATCACACATCCTCCCTCCCTTCTTTTTGTGTGCCTATACCAAACTCAACAAAGTCTAAAAGCTTAAGCTTCAGAGAAAATCCTACTCTATCTGATTTATACAACTTCAGATCTTCTTTGGTGAATTTCACTCTCTCTGACCTCAGAATTGCAACCAACAATTTTAGCAAAGAAAATTTGATTGGGAGAGGGGGATTCGCGGAGGTTTACAAGGGTCGCCTTCTAGATGGACAGCTGATAGCGGTTAAGCGACTGAATAAAGGGACTTTGGATGAGAGAACGTCAAACTTTCTATCTGAGCTTGGCATTATTGCTCATCTAGACCATCCTAACACTGCCAAGCTTATTGGATGCGGTGTAGAAGGAGAAATGCACCTTGTCTTTCAACTATCTCCATTGGGAAGTTTAGACTCTCTTCTTCATGGTTCGAACAAAAACGAATTAGATTGGAGTAAAAGGTATAAAATTATGGTGGGGATAGCCGACGGCCTCCTCTATCTTCATGAGTATTGTCAAAGGCGAATCATTCATAGAGATATTAAAGCAGAGAATATTCTGCTGACAGAGAATTTTGAGCCTCAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATGTAGCCACCATAATGTACAGAAATCTGAAGGCACATTCGGGTATTTTGCACCTGAATATTTGCTGCATGGCATAGTAGACGAGAAAACCGATGTTTACTCCTTCGGTGTCCTGCTTTTGGAGATTATAACCGGGCGTAGAGTTTTGGATCATTTGCACCAAAGTCTTGTGTTATGGGCAAAGCCTTTGCTTGATGCTAATAACATCAAGGACCTTGTTGATCCTTCTCTTGGAGGTGATTATGACCAAGAACAAATGGATCGTATTGTTTTGACTGCATCTCTTTGTGTTGAGAACTCTCCTATCTTACGCCCCCGTATGAGTCAGGTTTCAATACTGCTAAAAGGTGATGAATGTGCAAAAGAATATCAGAGACAATCCCTCCAAAGAACATTCTCAGAGAAGTGA 1293 0.3998 MANHDHHKDYCLWDPKTSPANRLKKISMKDAFFNHKNKSASTQDLNHTQDCITDFDADKQSELVTGCSNLRARFQLDKAFKTWKKRSINHTSSLPSFCVPIPNSTKSKSLSFRENPTLSDLYNFRSSLVNFTLSDLRIATNNFSKENLIGRGGFAEVYKGRLLDGQLIAVKRLNKGTLDERTSNFLSELGIIAHLDHPNTAKLIGCGVEGEMHLVFQLSPLGSLDSLLHGSNKNELDWSKRYKIMVGIADGLLYLHEYCQRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQCSHHNVQKSEGTFGYFAPEYLLHGIVDEKTDVYSFGVLLLEIITGRRVLDHLHQSLVLWAKPLLDANNIKDLVDPSLGGDYDQEQMDRIVLTASLCVENSPILRPRMSQVSILLKGDECAKEYQRQSLQRTFSEK* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0228 430 Pfam Protein tyrosine and serine/threonine kinase 146 352 IPR001245 GO:0004672|GO:0006468
Tpr6g0228 430 SUPERFAMILY Protein kinase-like (PK-like) 117 406 IPR011009 -
Tpr6g0228 430 SMART serkin_6 143 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g0228 430 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524
Tpr6g0228 430 Gene3D Phosphorylase Kinase; domain 1 104 217 - -
Tpr6g0228 430 ProSiteProfiles Protein kinase domain profile. 143 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g0228 430 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 5 429 - -
Tpr6g0228 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Tpr6g0228 430 Gene3D Transferase(Phosphotransferase) domain 1 220 428 - -
Tpr6g0228 430 PANTHER OS08G0249100 PROTEIN 5 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0228 Tpr-Chr6 1857797 1861543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0228 120 416 Receptor kinase-like Gene Family AT1G53420 43.137 1.27e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tpr6g0228 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0228 - - cam:101512181 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1492 1 13702237 13706028 Tpr6g0228 6 1857797 1861543 ECH
Tpr1g1249 1 11167581 11170809 Tpr6g0228 6 1857797 1861543 ECH
Tpr7g2743 7 34628483 34632046 Tpr6g0228 6 1857797 1861543 ECH
Tpr6g0228 6 1857797 1861543 Tpr6g0228 6 1857797 1861543 ECH
Tpr6g0228 6 1857797 1861543 Tpr1g1492 1 13702237 13706028 PCT