Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0215 ATGGCTCTTCATTTATTTCAAATGCTAAAAACTTCGGATTATGCATCCGTAATATCTATGAACCTATTTGTGGCATTGCTATGTGCTTGTATAGTTATTGGCCATCTTCTTGAGGAGAATCGATGGATTAACGAGTCTATCACCGCCCTTTTAATAGGTCTATGTACTGGTGTGGTGATTTTGTGGATAAGCGGTGGTAAAAGCTCGCATCTACTCGTATTTAGTGAAGATCTTTTTTTTATATATCTTCTACCTCCCATCATCTTTAATGCCGGGTTTCAGGTGAAAAAGAAACGGTTTTTCGTTAATTTCATCACCATCATGATGTTTGGTGCTATTGGTACATTAATAAGTTGTAGCATCATATCTTTTGGTGTGATAGAAATTTTTAAGAGATTGGGTATTGGTACGCTGGAGCTAGGGGAGGCTCTAGCAATTGGTGCAATATTTGCCGCAACGGATTCTGTGTGCACGTTGCAGGTGCTAAACCAGGATGAGACACCTTTACTATACAGCCTTGTATTTGGTGAGGGTGTTGTGAATGATGCTACTTCAGTGGTTCTTTTCAATGCAATCAAAAGTTTTGATCTTGAACAACCTGGCCATGGAATTGCTTTGCAATTTTTTGGCAACTTCTTGTATTTGTTTATAGCAAGCACCATGCTTGGATTTTTGGGTGGTCTACTTAGTGCATACATTATCAAAAAGCTCTATTTTGGAAGGCACTCGACTGATCGTGAGGTTGCTCTGATGATGCTAATGGCATACCTTACCTACATTTTGGCTGAAGTAAGTTCTAAAGAACTTCAAAAGTTTTTTTTAGCTTTGCATATTCCATCTAATCTTGCGTCTTACATAAATCTACATGTTTTGCAGTTATGGTTTCTTAGTGGCATCCTCACTGTATTCTTTTGTGGGATTGTAATGTCTCATTATACATGGCATAATGTGACTGAGAGCTCAAGAATCACTACCAAACATTCTTTTGCAACCCTGTCATTTGTTGCTGAGACATTTCTCTTCCTTTATGTTGGTATGGATGCATTGGACATTGAAAAATGGAGATTTGTTAGTGATAGACCTGGAACATCTGTTAGTGTGAGTTCAGTATTATTAGCTCTAGTACTCGTTGGAAGAGCAGCATTTGTTTTCCCCTTATCCTTCCTAATGAACTTGACTAAAAAGTCAGAAAATGATAAACTAAGCTTCAGCATGCAGGTGATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTATAATGAGTTTTCTAGTACATCTGGGCATGCTCAACTGCGATTCAATGCTACCATGATCACAAGTACTATCACTGTTGTGCTTGTCAGTACAATGGTGTTTGGTATGATGACAAAGCCACTAATAAGGTATTTACTACCCTTTCCTCCTCCTCCTCCAAAACGGAAAAACAGCACTGTAAGTCTTGATGAATCTGCTTCACCTTCACCAAAATCAATCACTGTGCCGTTCCTTGGAAGTAACCATGATTCTGAAGTTGAAACTGATGCCACTGATTATCAACGTCCCAGCAGCATTCGTGATTTACTCACCACTCCAACACACACTGTACATCGGTTATGGCGTAGGTTTGATGATGCATTTATGCGTCCGGTTTTTGGTGGTAGGGGTTTTGTTCCTTTTGTTCCTACCTCGCCAACCGAGTGCAGCGGTCAACCGAGTCCCGAATGGGATTGA 1728 0.4005 MALHLFQMLKTSDYASVISMNLFVALLCACIVIGHLLEENRWINESITALLIGLCTGVVILWISGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKRFFVNFITIMMFGAIGTLISCSIISFGVIEIFKRLGIGTLELGEALAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLEQPGHGIALQFFGNFLYLFIASTMLGFLGGLLSAYIIKKLYFGRHSTDREVALMMLMAYLTYILAEVSSKELQKFFLALHIPSNLASYINLHVLQLWFLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAETFLFLYVGMDALDIEKWRFVSDRPGTSVSVSSVLLALVLVGRAAFVFPLSFLMNLTKKSENDKLSFSMQVIIWWAGLMRGAVSMALAYNEFSSTSGHAQLRFNATMITSTITVVLVSTMVFGMMTKPLIRYLLPFPPPPPKRKNSTVSLDESASPSPKSITVPFLGSNHDSEVETDATDYQRPSSIRDLLTTPTHTVHRLWRRFDDAFMRPVFGGRGFVPFVPTSPTECSGQPSPEWD* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0215 575 Pfam Sodium/hydrogen exchanger family 23 264 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tpr6g0215 575 Pfam Sodium/hydrogen exchanger family 285 466 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tpr6g0215 575 PANTHER SODIUM/HYDROGEN EXCHANGER 2 6 265 - -
Tpr6g0215 575 PANTHER SODIUM/HYDROGEN EXCHANGER 2 282 568 - -
Tpr6g0215 575 PANTHER SODIUM/HYDROGEN EXCHANGER 282 568 IPR018422 GO:0006812|GO:0015299|GO:0016021
Tpr6g0215 575 PANTHER SODIUM/HYDROGEN EXCHANGER 6 265 IPR018422 GO:0006812|GO:0015299|GO:0016021
Tpr6g0215 575 MobiDBLite consensus disorder prediction 479 517 - -
Tpr6g0215 575 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr6g0215 575 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr6g0215 575 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr6g0215 575 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr6g0215 575 MobiDBLite consensus disorder prediction 482 505 - -
Tpr6g0215 575 Gene3D - 139 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0215 Tpr-Chr6 1760628 1765717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0215 9 569 Antiporters AT3G05030 71.936 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0215 - - gmx:100789667 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0215 6 1760628 1765717 Tpr6g0215 6 1760628 1765717 ECH
Tpr6g0215 6 1760628 1765717 Tpr1g1504 1 13837219 13843316 PCT