Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0186 ATGTTGGATGAAGGAGAAGGAGGAGCAGAACAGTTTGAGTTAGAGCAATTGAGGTTGAGGACTACAACTACTAATACTACTAGTCTTCTTCTTCATTCCTCTTCTTCTACAAACAACAACAACAACAACACCTTCCACTACATTCCTTTAATTCATCCTCCTAATTACAACAACAACCACCCTTCTAGTTCTAGTTCTATTTCCAATTCTCAATTTCAAACTCAAACAAATTTCTTCCCTCCATCAATATTATTGCCCCACCACTCTCCTACACATTATCACAATAACACTACAACCTTTAATTCTAACTTCCAGATCCAATCTCCACCACCTATGTTCACCGATTCCACCTGGACCAACCATCAACTTCTTGCACTCTTCAAGATCACATCTACCATCCACAATTTCTTCCCAGATCAACTCATCACATGGGACCATGTCTCAAGGAAGCTAGCTGAGGTTGGGATTAACAAGAGTGCTGAGAAGTGTAAGGATAAGTTTGAAGATGATAACATATCATCATTTTTCAAGATTCATAATAATCATGATCATAATTACCCTCCTCGGTTTATTAGTGAGCTTCAAGATCTTTATCAAGGTGGTGTTAGTGCTGATGAACAACAAAATTCTCATGAAAAGGAAAACACCCAACAACACCAAGAAGAAAATTCAAGAGATGGTGATGATACTGACATAGTAGTAGTGACCAAACAATGTGATGATGATGACGACGACGACGACAAGGTGATTGAAAAATCAAAGAGAAAGAAGTGGAAGAGACGCAATAGGTTTGAAATGTTGAAGAGTTTTTGTGAGACAGTGGTTAACAAAATGATGGCACAACAAGAAGAAATACACAATAAACTACTTGAAGACATGCTCAAAAGAGATCAAGAAAAGCTTGCTAGAGAAGAAGAATGGAAAAATCAAGAGATAGAAAGGATGAACATGATGGCAAAAGAACAAGCTATTGCAAGTGATAGACAATCCACCATAATCCATTTCTTGAACAAATATCTATCCACAGATGGAAATGGCAAAGGACGTTCTTCTTCCCAAAACCCTAATGATCAACCTTCTAACAATCTTGAAGTTGAATCAACACCTTCTTCTTCTAATGTGATAGCACAAGCACAACAAAACCCTAGCTCAAGTGAGACAGTAGTGGAATCAAATTACACTTCTACCCTTGTTGTGCCAACAACAATGGAGAAATTAGAGGATAGGAGAAGATGGCCAAGAGATGAAGTGTTGGCACTAATAAACCTCAAGTCTACTACAAGTGTAATAAATCGAAGCAACAATGTTGAAGAAAAAGAAGGAAATAGTAACATTAAGGGACCTTTGTGGGAGAGAATCTCTGAAGGGATGTTAGAGATGGGATACAAGAGAAGTGCAAAGAGATGTAAAGAAAAATGGGAAAACATAAACAAGTATTTTAAGAAGACAAAGGATGTTGTCAATAAGAAGAAAAGGTCATTGGATTCTAGGACATGTCCTTATTTTCATCAACTTAGTTCTTTGTATAATCAGCAGCAGGAGGGAAAACTAATTGATAAATCTCAATCTCAATCTCAATTAGTAACAAATCCAATCTCAAATTCAGCTGACAAAGTAGATGATCAACCACAAGCGGAGTCTTCTGATTCTCCAGTGGGGTCTAGTGTGGTATAA 1674 0.3728 MLDEGEGGAEQFELEQLRLRTTTTNTTSLLLHSSSSTNNNNNNTFHYIPLIHPPNYNNNHPSSSSSISNSQFQTQTNFFPPSILLPHHSPTHYHNNTTTFNSNFQIQSPPPMFTDSTWTNHQLLALFKITSTIHNFFPDQLITWDHVSRKLAEVGINKSAEKCKDKFEDDNISSFFKIHNNHDHNYPPRFISELQDLYQGGVSADEQQNSHEKENTQQHQEENSRDGDDTDIVVVTKQCDDDDDDDDKVIEKSKRKKWKRRNRFEMLKSFCETVVNKMMAQQEEIHNKLLEDMLKRDQEKLAREEEWKNQEIERMNMMAKEQAIASDRQSTIIHFLNKYLSTDGNGKGRSSSQNPNDQPSNNLEVESTPSSSNVIAQAQQNPSSSETVVESNYTSTLVVPTTMEKLEDRRRWPRDEVLALINLKSTTSVINRSNNVEEKEGNSNIKGPLWERISEGMLEMGYKRSAKRCKEKWENINKYFKKTKDVVNKKKRSLDSRTCPYFHQLSSLYNQQQEGKLIDKSQSQSQLVTNPISNSADKVDDQPQAESSDSPVGSSVV* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0186 557 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 351 549 - -
Tpr6g0186 557 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 26 354 - -
Tpr6g0186 557 MobiDBLite consensus disorder prediction 343 392 - -
Tpr6g0186 557 MobiDBLite consensus disorder prediction 202 231 - -
Tpr6g0186 557 Gene3D - 412 482 - -
Tpr6g0186 557 Gene3D - 118 177 - -
Tpr6g0186 557 Pfam Myb/SANT-like DNA-binding domain 409 507 IPR044822 -
Tpr6g0186 557 ProSiteProfiles Myb-like domain profile. 409 477 IPR001005 -
Tpr6g0186 557 MobiDBLite consensus disorder prediction 513 557 - -
Tpr6g0186 557 MobiDBLite consensus disorder prediction 207 231 - -
Tpr6g0186 557 PANTHER - 26 354 - -
Tpr6g0186 557 PANTHER - 351 549 - -
Tpr6g0186 557 CDD GT1 410 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0186 Tpr-Chr6 1552046 1554492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0186 118 511 Trihelix Transcription Factor Family AT5G28300 39.785 1.75e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr6g0186 Myb_DNA-bind_4 4.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0186 - - mtr:MTR_7g114860 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0186 6 1552046 1554492 Tpr1g1534 1 14117417 14120135 PCT