Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0167 ATGGTTGTTAAAGTAAAGAGAGAAACTCTTGAAGCATGCATGACATGTCCTCTTTGTCAAAAGCTTCTCAAAGATGCTACTACCATTTCTCTATGCCTTCATACTTTTTGCAGGAAGTGTATATATGAGAAGCTTTCAGATGAAGAGGTGGATTGTTGTCCGGTATGCGAAATTGATCTGGGCATTCTTCCGGTTGAAAAGCTCAGGCCCGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCTTTTAAACATAAAAAGGTTCAAGCCGAAGATCAGGCCGAAGATCAACCCGAAGAAGTTGTTCCCTCAATACCGCTGCCAGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACACATACTAGCTTTACAGGAAAGAGAACAAAAACTGGTACAAGAAAGGCTGCTGGTTTACGTGGATGCAGTTTTATCCCTGATGAATCCATAAAGGAAGAAACACGCGATGAAGATAATCTGAATTCTTCCACAGGTGAGACTTCTAAGAAGCATAGATCCAATGAAGATACAGACAACAATATTGACCTTACAGAGGGGAAGGCTGATCTTTGGACGCCCTTGAACTGTCTTGTTGAAGCGGCCAATAGAACAAAGCCCTCCAGGTCAAATTTACAAGGGACTGCCAAATTAGAGTCTCCAATTACTCCTCATGGTGGACTAGTGATGTCAGAAACTACAACCAAATTGGAGCCACCTACATCTGCCCATAGTGAATTACACATGCCGAAAACCAAGAACAAGAGTAATGGACATAAAAGAAAGTTTGGAGATGACAAGGATGGAAACACCTTGCCTTCAGGACCAGTGAAGCGAAAAAGGCTGCGTCCTTCTAATCAGAAGAGAGCAGCAGCATCTGAGATGTCTGCCTCAGCCCACAACAGGAAAAACAGTCCTATTTGGTTTACATTAGTTGCTTCAGAAGACCAGAATGGAGAAGTTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATAAAGGATGGTACTGTACCCGTCTCATTTATTCAAAAGTACCTCATGAAGAAACTTAATCTTGCTAGCGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGCTACCATCTTTGCAAATGCATAACTTAGTTGATCTGTGGTTCTGCACATCATCAACATCAAAAAAGCTACCGGCATCTGTGGGATCTTCGGCTAAGGACTTTGTGATGGCTTTATCGTATTGTCGAAAGACCTTACCTCTTTGA 1272 0.4237 MVVKVKRETLEACMTCPLCQKLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCEIDLGILPVEKLRPDHNLQDIRTKIFPFKHKKVQAEDQAEDQPEEVVPSIPLPAKRKERSLSSLVVSAPKVSTHTSFTGKRTKTGTRKAAGLRGCSFIPDESIKEETRDEDNLNSSTGETSKKHRSNEDTDNNIDLTEGKADLWTPLNCLVEAANRTKPSRSNLQGTAKLESPITPHGGLVMSETTTKLEPPTSAHSELHMPKTKNKSNGHKRKFGDDKDGNTLPSGPVKRKRLRPSNQKRAAASEMSASAHNRKNSPIWFTLVASEDQNGEVSLPQISACYLRIKDGTVPVSFIQKYLMKKLNLASEAEVEIMCRGQPVLPSLQMHNLVDLWFCTSSTSKKLPASVGSSAKDFVMALSYCRKTLPL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0167 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 104 IPR013083 -
Tpr6g0167 423 Gene3D - 295 400 - -
Tpr6g0167 423 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Tpr6g0167 423 MobiDBLite consensus disorder prediction 235 249 - -
Tpr6g0167 423 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Tpr6g0167 423 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 2 420 - -
Tpr6g0167 423 SUPERFAMILY RING/U-box 9 80 - -
Tpr6g0167 423 SMART ring_2 16 56 IPR001841 -
Tpr6g0167 423 MobiDBLite consensus disorder prediction 212 226 - -
Tpr6g0167 423 MobiDBLite consensus disorder prediction 153 193 - -
Tpr6g0167 423 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 420 IPR044807 GO:0004842
Tpr6g0167 423 MobiDBLite consensus disorder prediction 90 109 - -
Tpr6g0167 423 MobiDBLite consensus disorder prediction 212 307 - -
Tpr6g0167 423 MobiDBLite consensus disorder prediction 256 282 - -
Tpr6g0167 423 MobiDBLite consensus disorder prediction 155 192 - -
Tpr6g0167 423 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0167 Tpr-Chr6 1419986 1425984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0167 1 342 C3H Transcription Factor Family AT2G30580 45.263 5.42e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0167 K16277 - gmx:100783999 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0167 6 1419986 1425984 Tpr6g0167 6 1419986 1425984 ECH