Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0151 ATGCATTCTTCATCTTCACCCCTTCTTCCCACTCTTATGGAAAGCAAATGTATGAAACCCCCGGATTCTTTTCACTGTTCACCTGGTAGGGGTCTGAATACAAATCCTACCTCAATGCAAGCTGCATCACTGAATCCGATCAGAAGTGTTCGTCCGGTGTTTTCAACCACTGTTGAATGTCCTGGTGGCATCCCTTTTTCTCCCATTTCACAGCATGATAAGCAATATCAAGATTCTCCCTTCGCTTCTCAAACATTAGGTGACAATGTGTCTTCGGAAATACACTCAACAGCATTCACTTCTCACCCTCAACAAAATGATGATATTTCTTGGGGACCAGATCCATTGCAGGATATTCTTAGTTTTCCTGAACTTTTTTCTGTTCAGAATGATCCGGTGGAAAACAGTGCTGCTTGTTACATGAATGATGACAATGTCAAAAAATCTGATTTCGGGGAATGGGTTGAACAGCTAATGACAATTGATGATACTCTCCACCCAAATTGGAATCAGCTTCTTGGTGATGACAATGCTGCAGAACCAACACCGAAGGTTTCTCAGAAGCCGCATACACCATCTGCAGAAGTTAACATTCTTTGTAATTCAGCATCGGCATCAACTGCATCTCAATCCAAGCCTAGAATGCGCTGGAGTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTTAACCAGCTTGGTGGTAGTGACAAGGCTACTCCAAAAGGTGTCCTGAATCTGATGAATGTTGAAGGCCTTACTATCTACCATGTAAAAAGCCACCTGCAGAAGTATAGAACTGCCAGATACAAACCTGAGTCACCAGAAGAAACTTCTGAGAAAAAGATGAGTTCAATTGAAGAAATGAAATCTCTGGACTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGGTTGCAGATGGAACTCCAGAAACGGCTCCACGAACAACTTGAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTGAGATGATGTTTGAGAAACAGAAACTGATAGTTGACAACAAGGGTTCTACCACTTCAAACGCGCCTTCTTCTGCATTGTTGGACACGGCGCTACCTTCTTCTCCTGTAGACAATTCAAAAACGTCAAATGACGAACGCGGAAAATTAAGATGTAACACCGAAGAAAGTTCCCAAGATGCAAGCAAAAAAGAAATGGTAGATGAAGCTGAAGTTACCAATGAACATGAGAGGGTAGATGATCAGTTTTCTGACGTACCCCCGACAAAACGGGCAAAGATTCAATGA 1287 0.4242 MHSSSSPLLPTLMESKCMKPPDSFHCSPGRGLNTNPTSMQAASLNPIRSVRPVFSTTVECPGGIPFSPISQHDKQYQDSPFASQTLGDNVSSEIHSTAFTSHPQQNDDISWGPDPLQDILSFPELFSVQNDPVENSAACYMNDDNVKKSDFGEWVEQLMTIDDTLHPNWNQLLGDDNAAEPTPKVSQKPHTPSAEVNILCNSASASTASQSKPRMRWSPELHEAFVEAVNQLGGSDKATPKGVLNLMNVEGLTIYHVKSHLQKYRTARYKPESPEETSEKKMSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKHLEMMFEKQKLIVDNKGSTTSNAPSSALLDTALPSSPVDNSKTSNDERGKLRCNTEESSQDASKKEMVDEAEVTNEHERVDDQFSDVPPTKRAKIQ* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0151 428 MobiDBLite consensus disorder prediction 349 374 - -
Tpr6g0151 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 266 IPR006447 GO:0003677
Tpr6g0151 428 Pfam Myb-like DNA-binding domain 214 265 IPR001005 -
Tpr6g0151 428 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 428 IPR044848 GO:0003700
Tpr6g0151 428 MobiDBLite consensus disorder prediction 375 420 - -
Tpr6g0151 428 Pfam MYB-CC type transfactor, LHEQLE motif 299 342 IPR025756 -
Tpr6g0151 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 269 IPR017930 -
Tpr6g0151 428 MobiDBLite consensus disorder prediction 266 286 - -
Tpr6g0151 428 SUPERFAMILY Homeodomain-like 210 266 IPR009057 -
Tpr6g0151 428 MobiDBLite consensus disorder prediction 349 428 - -
Tpr6g0151 428 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 428 - -
Tpr6g0151 428 Gene3D - 211 270 - -
Tpr6g0151 428 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0151 Tpr-Chr6 1289391 1298962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0151 93 372 G2-like Transcription Factor Family AT3G04450 47.492 6.46e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr6g0151 Myb_DNA-binding 9.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0151 - - mtr:MTR_7g115530 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0151 6 1289391 1298962 Tpr1g1577 1 14667294 14671675 PCT