Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0142 ATGGCAAAGACTCCTTGTTGTGAAAGGATGGGAATGAGGAAAGGACCATGGAGTGCTGAAGAAGATCATATCTTGATTTCTTATGTTCAAACATATGGTCATGGAAATTGGCGTGCCCTTCCTAAGCAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTAGGCTTCGATGGATAAATTACTTGAGACCAGATATCAAACGAGGAAAATTCAGCAAGGAAGAAGAAGATTCTATCTTAAAGCTACATGAAATTCTTGGAAATAAATGGTCAGCTATTGCAGCAAAATTACCAGGAAGAACGGATAATGAAGTAAAGAACTTTTGGCATACTCATTTGAAGAAAAGGGTCCAAAAGAATAAAGTGCACAATGCTAATATTACCTCCTTCTCATATACTTTACAAGAGGCACAAACAAGTGATGCTTCTTCTAGTGTCGGTGAAAAAATAGTGATCTCTAATTATGGTTTAGTAGCCTCAAGTAAGGATCCATCAGTTGTAGGCACAGAATTTTGCAATGCAATCTCTTGTGATGATACTTTAGGAGAAAATATGGATAATCATGGTTCATGTCAGATTAGTGAAGAAATGGAATTTTGGTATAGTGTATTCATCAAATCAGGGCAGACATCATGA 633 0.3697 MAKTPCCERMGMRKGPWSAEEDHILISYVQTYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDSILKLHEILGNKWSAIAAKLPGRTDNEVKNFWHTHLKKRVQKNKVHNANITSFSYTLQEAQTSDASSSVGEKIVISNYGLVASSKDPSVVGTEFCNAISCDDTLGENMDNHGSCQISEEMEFWYSVFIKSGQTS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0142 210 CDD SANT 69 112 IPR001005 -
Tpr6g0142 210 Gene3D - 68 135 - -
Tpr6g0142 210 CDD SANT 16 61 IPR001005 -
Tpr6g0142 210 Gene3D - 14 66 - -
Tpr6g0142 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr6g0142 210 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr6g0142 210 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr6g0142 210 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr6g0142 210 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Tpr6g0142 210 SMART sant 66 114 IPR001005 -
Tpr6g0142 210 SMART sant 13 63 IPR001005 -
Tpr6g0142 210 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr6g0142 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr6g0142 210 PANTHER MYB TRANSCRIPTION FACTOR 1 208 - -
Tpr6g0142 210 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0142 Tpr-Chr6 1231419 1233448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0142 1 203 MYB Transcription Factor Family AT2G31180 47.660 3.75e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g0142 Myb_DNA-binding 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0142 K09422 - gmx:102663040 316.235